Gordonia sp. PS3: ACE11G_10195
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Entry
ACE11G_10195 CDS
T10835
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gop Gordonia sp. PS3
Pathway
gop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACE11G_10195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gop03019
]
ACE11G_10195
Messenger RNA biogenesis [BR:
gop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACE11G_10195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
XGY33100
LinkDB
All DBs
Position
complement(2204620..2206521)
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AA seq
633 aa
AA seq
DB search
MADNSNNTAGDNSGNGNADGGGRKGGGRRRASRKAGPPADHPNKARAADSGAAKLPPQVA
AATGSSVTGDVIDRLPAPPKLPKGGLRVVALGGIGEIGRNMTVFEYDGKLLVVDCGVLFP
EDQQPGVDLILPDFGYIEDRVEDIEAVVLTHGHEDHIGAVPFLLKLRGDIPIVGSRFTLA
LVAAKCREHRLRPKLVQVAEGDRLSHGGFDCEYFAVNHSIPDALAVAIRTPAGLVLHTGD
IKLDQLPLDNRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKAR
QRVIVASFASHVHRIQQIVDVAHRHGRRVTFVGRSMVRNMQIAQDLGYLTVPDGVVVDMD
TAATLPDHRLVLISTGSQGEPLSALSRMARGEHRQINIRADDLVVLASSLIPGNENSVFA
VVNGLAKRGATVVTQASAKVHVSGHASAGELLYLYNAVRPSNAMPVHGEWRHLRANAALA
EATGVPADRIVLAEDGVVVDLVDGRARITGRVPVGYVYVDGLSVGDVGESTLSDRLVLGE
GGFISISVAVDASTGAAVSKPTVSGRGFSDDPGALNDAAELVNKALVELANEGVTDTHRI
AQGVRRAVGRWVAEKYRRRPMIVPTVIAVGERR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacagcaacaacaccgccggcgacaacagcggtaacggcaacgccgacggg
ggcggccgcaagggcggcggtcgtcggcgggcctcacgcaaggcgggcccgcccgccgac
cacccgaacaaggcgcgggcggccgattcaggcgccgcgaaactgcctccgcaggtggcc
gcggccaccggatcgagcgtcacgggcgacgtcatcgaccggctgcccgccccgccgaag
ctgcccaagggcggactccgcgtcgtcgcgctcggcggcatcggtgagatcggccgcaac
atgaccgtcttcgagtacgacggcaagctgctcgtcgtggactgcggcgtgctcttcccc
gaggaccagcagcccggcgtcgacctgatcctgcccgacttcggctacatcgaagaccgc
gtcgaggacatcgaagcagtggtcctgacgcacggccacgaagaccacatcggcgcagtg
cccttcctgctcaagctccgcggcgacatcccgatcgtcggttcccggttcacgctcgca
ctggtcgcggccaagtgccgcgaacaccgcctgcggccgaagctggtccaggtggccgag
ggcgatcgcctctcgcacggcggattcgactgcgagtacttcgcggtgaaccactcgatc
cccgacgcgctcgccgtcgcgatccgtacaccggccggtctggtcctgcacacgggcgac
atcaagctcgatcagctgccgctggacaaccgtctcaccgacctggccggcttcagcaga
ctcggcgacgagggcgtcgacctgttcctggtggactcgaccaacgccgaggtccccggt
ttcgtcacccccgagcgtgagatcggcggcgtcctcgacaccgtcatcggcaaggcccgc
cagcgcgtgatcgtcgcctccttcgcgagccacgtccaccggatccagcagatcgtcgac
gtggcacaccggcacggtcggcgcgtgaccttcgtcggccggtcgatggtccggaacatg
cagatcgcgcaagacctcggttacctcacggtgccggacggcgtggtggtggacatggac
accgcggccaccctgcccgaccaccggctggtgctcatctccaccggctcgcagggagag
ccgctctcggccctctcgcgcatggctcgcggtgagcaccgccagatcaacatccgcgcc
gacgacctcgtggtcctcgcgtcgtcgctgatcccgggcaacgagaactccgtgttcgcc
gtggtgaacggtctcgccaagcgcggcgccaccgtggtgacccaggccagcgccaaggtc
cacgtctccggccatgcctccgcgggcgagttgctgtacctctacaacgcggtgcgcccg
tcgaatgccatgcccgtgcacggtgaatggcgccacctgcgcgccaatgccgcgctcgcc
gaggccacaggggttcccgccgaccggatcgtcctcgccgaggacggagtggtcgtcgac
ctggtggacggacgcgccaggatcaccggccgcgtgccggtcggatacgtctacgtcgac
ggactctcggtcggcgacgtcggggaatcgacgctctcggaccgcctcgtgctcggcgaa
ggcggcttcatctccatctcggtggcggtggacgcgtcgacgggtgccgcggtgagcaag
ccgacggtgtccggccgcggcttctccgacgatcccggcgccctgaacgacgccgccgaa
ctggtgaacaaggcgctcgtcgaactggccaacgaaggggtcaccgacacacaccggatc
gctcagggcgtgcggcgcgcggtgggtcgatgggtggctgagaagtaccggcgccggccg
atgatcgtcccgaccgtcatcgcggtgggggagcggcggtga
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