Gordonia sp. PS3: ACE11G_13305
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Entry
ACE11G_13305 CDS
T10835
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gop Gordonia sp. PS3
Pathway
gop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACE11G_13305 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gop03400
]
ACE11G_13305 (mfd)
Enzymes [BR:
gop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACE11G_13305 (mfd)
DNA repair and recombination proteins [BR:
gop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACE11G_13305 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XGY33672
LinkDB
All DBs
Position
complement(2876189..2879779)
Genome browser
AA seq
1196 aa
AA seq
DB search
MSTPSAPRPSLSGLTSFAFRDAAFGLLRERVGETRLDITAPDAARPLVVAQLAEISENLV
LVVTANGREADDLTTELSELLPSGPNGTSVVAQFPSWETLPHERLSPSADTVGARLAVLS
RLADPAVSPLRVVVATVRSLVQPMAPGLGAMRAVTLTEGTEAQFDGLIEKLVEMAYERVD
MVGARGEFAVRGGILDIFPTTADYPVRVEFWGDEVTDIRAFSVADQRTQPEIDTSVVQIH
PCRELVLTAEVRDRAAELASTVEDESLREILTKLSEGIPVEGMEALIPALVDGRMQMLTE
VMPDGTRVLVLDPEKVRTRAADLARTGEEFLEASWNAAALGAAAPVAAGEPSIDLSASAY
RSVGDVERATVEAGKPWWTMSPLSAGSGEELELDLQPGPAPHGDPAELDEFMTSLRAQVA
SGGRAALIAAGRGTAMRFVDRLGEAEVPARLVEPGDELPADAVGVFHGTLRRGLVCPSAR
LVIATEADVTGARVVGVKDGRRLPAKRRNQVDPLALSAGDLVVHDQHGIGKFVEMIERTV
SGARREYLVIEYAPGKRGQPGDRLYVPMDALDQLSRYVGGEQPGLSKLGGSDWANTKRKA
RKAVREIAGELVQLYAARHAAPGFAFSPDTPWQREMEDAFDYTETVDQMTVIGEVKADME
KPVPMDRVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAGQHLQTFTERMAGFP
VTVRGLSRFTDPAESKEIIAQMASGEVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYSDKQ
VAAAIRRELLRDGQVFYVHNRVSTIDKTAKHLANMIPEARVVVAHGQMGEEQLERTVQGF
WDREYDVLVCTTIIETGLDISNANTLIVDRAENFGLSQLHQLRGRVGRSRERGYAYLLYS
PDKPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGKAVATEETVEVRIDLPVDAHIPVEYVEADRLRLEAYRKLASATSD
DDVDEVMSELTDRYGEPPVETQRLAAIARLRLRCRERGIAEVGLAGQSIRISPMLLLDSQ
QVRLARMYSSASYRAATHMVTLPIPRTGGVGSPRLRDTELVDYLVTFLQTIAPLES
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccccctctgcgccgcgtccatccctgtccgggctgacctccttcgcgtttcgt
gatgcggccttcggtttgctgcgggaacgagtgggcgagactcgcctcgacatcacggca
ccggacgcggcccggccgctggtggttgcgcaactggccgagatctccgagaacctcgtc
ctggtcgtgaccgccaacggtcgggaggccgacgacctcacgaccgaactgtcggaactg
ctgccgtcggggcccaacgggacgtcggtcgtcgctcaattcccgtcgtgggagacgctg
ccgcacgagcggctatcgcccagcgccgacacggtcggtgcccggctcgcggtgctcagt
cgactggccgacccggcggtgtccccgttgcgcgtcgtggtcgcgaccgtccgttccctc
gtgcagccgatggctcccgggctcggtgcgatgcgcgcggtcacgctcaccgaaggcacg
gaggcgcagttcgacggtctgatcgagaagctcgtcgagatggcctacgagcgcgtcgac
atggtcggtgcccgcggcgagttcgcggtgcgcggcggcatcctcgacatcttcccgacc
accgccgactacccggtgcgagtggagttctggggcgacgaggtgaccgacatccgcgcg
ttctccgtcgccgaccagcggacgcagccggagatcgacacgtcggtggtccagattcat
ccgtgccgagaactggtgctgaccgccgaggtccgggaccgggccgccgaactcgcgtcg
acagtcgaggacgagtcgctgcgcgagatcctgaccaaactgtcggagggcattcccgtc
gagggaatggaagcgctgatcccggcactcgtcgacggccggatgcagatgctcaccgag
gtgatgcccgacggcactcgggtactggtcctcgatccggagaaggtgcgcacccgtgcc
gccgatctggcgaggaccggcgaggagttcttggaggcgtcgtggaacgccgcggcgctg
ggggcagcggcgcccgtggccgcgggcgaaccctccatcgacctgtcggcgagtgcctac
cgcagcgtcggtgacgtcgaacgtgcgaccgtcgaggcgggcaaaccgtggtggacgatg
agtccgctctcggcgggatcgggcgaggagctcgaactcgatctgcagcccgggccggcg
ccgcacggcgaccccgccgagctcgacgagttcatgacgtcgttgcgcgctcaggtcgcc
tcgggcggtcgtgcggcgttgatcgccgccggccggggcactgcgatgcgattcgtcgac
cgtctcggtgaggccgaggtcccggcccggctcgtggagccgggcgatgagttgccggcc
gacgcggtcggcgtcttccacggcacgctgcggcgcggactggtctgcccgtcggcgcgt
ctggtgatcgccaccgaggcggacgtcaccggcgctcgcgtcgtcggtgtgaaggacggc
cggcgactgccggccaagcggcgcaatcaggtcgacccgctggcgttgagcgccggtgac
ctggtggtgcacgaccaacacggcatcggcaagttcgtcgagatgatcgaacgcacggtc
tccggtgcccggcgcgagtacctcgtgatcgagtacgcgcccggcaagcggggacagccg
ggcgaccgcctgtacgttccgatggacgcactcgaccagttgtcgcgctacgtcggcggt
gagcagccggggctcagcaagctcggcggttccgattgggccaataccaagcgcaaggcg
cgcaaggcggtccgggagatcgcgggcgaactggtgcagctgtacgccgcacggcatgcg
gcaccgggtttcgcgttcagccccgacaccccgtggcagcgggagatggaggacgccttc
gactacaccgagaccgtcgaccagatgacggtgatcggcgaggtcaaggccgatatggag
aagccggtcccgatggaccgggtggtggtcggcgacgtcggttacggcaagaccgagatc
gcagtccgcgccgcgttcaaggccgttcaggacgggaagcaggtcgcggtcctggtaccg
acgacgattctcgccgggcagcacctgcagaccttcaccgagcggatggcgggcttcccg
gtcaccgtgcgcgggttgtcgcggttcaccgatccggccgagtcgaaggagatcatcgcg
cagatggcctccggtgaggtcgacgtcgtcatcggcacgcatcggctgctgcagaccggc
gtccgatggaaagacctcggtctggtgatcgtggacgaggagcagcgcttcggtgtggag
cacaaggagcacatcaaagcgctgcgcacccacgtggacgtgctcaccatgtcggcgaca
ccgatcccgcgcaccctcgagatgtcgatggcgggtatccgcgagatgtcgaccatcctc
actccgcccgaggaacggcacccggtcctgacgtatgtcggcgcatactccgacaagcag
gtcgcggcggccatccggcgcgagctgctgcgcgacggtcaggtgttctacgtgcacaat
cgcgtctcgaccatcgacaagaccgccaagcatctcgcgaacatgattcccgaggcccgg
gtggtggtcgcgcacgggcagatgggcgaggagcaactggaacgaaccgtccagggcttc
tgggaccgcgagtacgacgtcctcgtgtgcaccacgatcatcgagaccgggctcgacatc
tcgaacgccaacaccctgatcgtcgaccgtgcggagaacttcgggctctcgcagctgcac
cagctgcgcgggcgcgtcgggcgaagccgggagcgcgggtacgcgtacctgctgtacagc
ccggacaagccgctgaccgagacggcctacgaccggctcgcgaccatcgcccagaacaac
gaactcggtgccggcatggcggtggcgctcaaggatctcgagctgcgcggtgccggcaac
gtcctcggtgccgagcagtccgggcacgtcgcgggtgtcggcttcgacctctacgtgcgg
ttggtcggcgaagcggtcgaggcgtaccgagccgcggccgacggcaaggcagtggcgacc
gaggagaccgtcgaggtgcgcatcgacctgccggtggacgcgcacatccccgtcgagtac
gtggaggcggaccggctcaggctggaggcataccgcaagctggcgtcggccaccagtgac
gatgacgtcgacgaggtgatgagcgaactgaccgaccgctacggtgagccgcccgtcgag
acgcagcgtctcgcggcgatcgcacgtctgcggctccggtgccgcgaacgcggtatcgcg
gaggtcggtctggccggtcaatccatccggatctcaccgatgcttctgctcgacagccag
caggtccggctcgcgcgcatgtactcgtcggcgagctaccgtgccgcgacccacatggtg
acactgccgatcccgcgtaccggcggcgtcggttccccccggctccgggacacagagctc
gtcgactatctggtcacgttccttcagacgatcgcgccgctggagtcgtag
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