Gordonia sp. PS3: ACE11G_14815
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Entry
ACE11G_14815 CDS
T10835
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gop Gordonia sp. PS3
Pathway
gop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACE11G_14815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gop03021
]
ACE11G_14815
03400 DNA repair and recombination proteins [BR:
gop03400
]
ACE11G_14815
Enzymes [BR:
gop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACE11G_14815
Transcription machinery [BR:
gop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACE11G_14815
DNA repair and recombination proteins [BR:
gop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACE11G_14815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
FAM92
CCDC-167
Motif
Other DBs
NCBI-ProteinID:
XGY33946
LinkDB
All DBs
Position
complement(3208236..3212192)
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHAELSTREAEIGVERKAILDDLEAALAERQQKLEAD
LAELEAEGAKADAKRKVRDAAERELKRMRDHANREVEALDEIWDKFTKLTPGDLIVDERL
YRELEDRFGEYFTGSMGAEAIKKLLENFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPQAMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTQKDGLTGEYT
GATDGDVERGVYSSPAEAIMAVDRGALTIQSRIKVRLTDQRPPADVEAELFPEGWTRGQP
WETVTTLGRVLFNELLPRDYPFIDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMSDVLVPPAKAEILERYEERADGLERKFQRGGLTPDERRDALVEIWKQA
TEEVGKALEDYYPDDNPITMIPKSGATGNMTQVRNLSGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIVVPL
GEKQPDGSIIRDAHVETSAYARTLAADAVDADGNVVVERGHDLGDPAIEALLAAGISEVK
VRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVTELFEARVPKGKAPIAEVSGRVRMEDDDRFYKITIIPDDGSDEVVYDKLS
KRQRLRVFRHEDGSERLLADGDHVEVGQQLLEGAADPHEVLRVMGPRQVQIHLVNEVQEV
YRSQGVSIHDKHVETIVRQMLRRVTIIDSGATEFLPGSLTERAEFEAANRAVVAEGGEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINNRSDKLVGLKENVIIGKLIPAG
TGINRYRNIEVQPTEEARAAAYALPTYDDTYYSPDGTFGAPSGAAVPLDDYGFGSDFR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaagatcggccttgcgacggccgacgacatc
cacaactggtcgtacggtgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgaccaaggccaaggtgcgccgtgagcgcatgggccacatcgagctggccgctccg
gtcacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccgccgtcgac
gacgagctgcgtcacgccgagctctcgacccgcgaggccgagatcggtgtggagcgcaag
gcgatcctcgacgatctcgaggccgctctcgccgagcgtcagcagaagctcgaggccgat
ctggccgagctcgaggccgagggcgccaaggccgacgccaagcgcaaggtccgcgacgcc
gccgagcgtgagctcaagcgcatgcgtgaccacgcgaaccgcgaggtcgaggctctcgac
gagatctgggacaagttcaccaagctcaccccgggcgatctgatcgtcgacgagcgtctg
taccgcgagctcgaggaccgtttcggcgagtacttcaccggctcgatgggcgccgaggcc
atcaagaagctgctcgagaacttcgacatcgaggccgaggccgagtcgctgcgcgagacg
atccgcagcggcaagggccagaagaagctgcgcgcgctgaagcggctgaaggtcgtggcg
gcgttccagcagtccggcaactcgccccaggcgatggtgctcgacgccgtgccggtgatc
ccgccggaactgcgcccgatggttcagctcgacggtggccgcttcgcgacctccgatctg
aacgatctgtaccgccgtgtcatcaaccgcaacaaccgtctcaagcgactgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccgggccgggcaaccgcccgctgaag
tccctgagcgatctgctcaagggcaagcagggccgattccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgaagcgtcatcgtcgtcggcccgcagctcaagctgcatcag
tgcggcctgccgaagctgatggctctggaactgttcaagcccttcgtgatgaagcgtctg
gtggatctcaaccaggcccagaacatcaagtcggccaagcgcatggtggagcgtcagcgc
cccgccgtctgggatgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgccgacgctgcaccgactcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcatcgggccgcccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgaccacccagaaggacggtctgaccggcgagtacacc
ggtgccacggacggcgacgtggagcgcggcgtctactcgagcccggccgaggccatcatg
gccgtcgaccgcggtgcgctgaccatccagtcgcgcatcaaggtgcggctgaccgaccag
cgtccgcccgccgacgtggaggcggagctgttcccggagggctggacccgtggtcagccg
tgggagaccgtcaccaccctgggacgtgtgctgttcaacgagctgctgccgcgcgactac
ccgttcatcgacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctgaaggacgtgggcttc
tactgggccacccgctcgggcgtcaccgtctcgatgtcggacgttctggtgccgccggcc
aaggcagagatcctggagcgctacgaggagcgggccgacggtctggagcgcaagttccag
cgcggtggtcttacccccgacgagcgtcgcgacgccctggtcgagatctggaagcaggcc
accgaagaggtcggtaaggcgctcgaggactactaccccgacgacaacccgatcacgatg
atcccgaagtcgggtgccacgggcaacatgacccaggtccgcaacctgtcgggtatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcgcccgatcaagtcctcgttccgc
gagggcctgaccgttgccgagtacttcatcaacacgcacggcgctcgtaagggtctggcg
gacacggcactgcgtacggccgactcgggctacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtccgcgagaccgactgcggcaccgagcgcggcatcgtggtgccgctc
ggcgagaagcagccggacggcagcatcatccgcgacgcccacgtcgagacctcggcgtac
gcccgtacgctcgcggccgatgcggtcgacgcggacggaaacgtcgtggtggagcgcggg
cacgacctgggcgatccggccatcgaggctctcctcgcggcaggcatctccgaggtcaag
gtccgttcggtcctgacctgtgccaccggcaccggcgtgtgcgcgcactgctacggccgt
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggcatcatcgcggcgcag
tcgatcggtgagcccggcacgcagctgacgatgcgtaccttccaccagggtggcgtcggt
gacgacatcaccggtggtctgccgcgagtcaccgagctgttcgaagcccgtgtccccaag
ggcaaggccccgatcgccgaggtctcgggccgggtccgcatggaggacgacgaccggttc
tacaagatcacgatcatcccggacgacgggagcgacgaggtcgtgtacgacaagctgtcg
aagcgtcagcgtctgcgcgtgttccgccacgaggacggcagcgagcgtctgctggccgac
ggcgatcacgtcgaggtcggtcagcagctcctcgagggcgctgccgatccgcacgaggtg
ctccgcgtgatgggcccgcgtcaggtgcagatccacctggtcaacgaggtccaggaggtg
taccggagccagggtgtgtcgatccacgacaagcacgtggagacgatcgtccgccagatg
ctgcgccgtgtgacgatcatcgactccggcgccaccgagttcctgcccggttcgctcacc
gagcgcgccgagttcgaggcggccaaccgggccgtcgtcgccgagggcggggagccggct
gccggccgaccggtcctcatgggcatcacgaaggcctcgctggccaccgattcgtggctg
tcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaacaaccgc
agcgacaagctcgtcggcctcaaggagaacgtgatcatcggtaagctgatcccggccggt
accggtatcaaccgctaccgcaacatcgaggtccagccgaccgaggaggcccgcgcagcg
gcgtacgccctgccgacctacgacgacacctactacagcccggacggcaccttcggtgcc
ccgagcggtgccgccgttccgctggacgactacggcttcggcagcgacttccgctga
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