Gordonia phthalatica: ACH46_04060
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Entry
ACH46_04060 CDS
T04097
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
goq
Gordonia phthalatica
Pathway
goq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
goq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ACH46_04060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
goq03400
]
ACH46_04060
Enzymes [BR:
goq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ACH46_04060
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ACH46_04060
DNA repair and recombination proteins [BR:
goq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ACH46_04060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
ALG83833
UniProt:
A0A0N9NE32
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All DBs
Position
869033..869926
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AA seq
297 aa
AA seq
DB search
MPELPEITAIATFLDSRAAGLPIRRVDVASLAVLKTADPPYTALAGRIVSAVDRIGKYLV
IRTVAGPDSAADDDPEIDLVLHLSRAGWVRWSDALSQTPPKPGGKGPIALRVHCGLPGEG
FDVTEAGTQKRLAAWIVRDTADVERIATLGPEVLGLTRDHLAGILAGSGARIKNLLTDQR
VIAGVGNAYSDEILHVAKLSPFATSKNLTDEQVTALHDAIRSVLLDAVARLEGQEAARLK
AEKRTGLRVHARTGLPCPVCGDTVREVSFADRSFQYCPTCQTGGKILADRRMSRLLK
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctccccgagatcaccgccatcgccaccttcctcgactcccgcgcggccggt
cttccgatccgccgggtcgacgtcgcctccctcgccgtgctcaagaccgccgatccgccg
tacaccgcactcgccggacggatcgtgtcggcagtggatcgaatcggcaagtacctcgtc
atccgcaccgtcgcgggccccgacagcgcagccgacgacgacccggagatcgacctcgtc
ctccacctctcgcgcgcgggttgggtccgctggagcgacgcgctctcacagactccgccg
aaaccgggcggcaaggggcccatcgccctgcgcgtgcactgcggcctgccgggggagggc
ttcgacgtcaccgaggccggcacccagaagcgtctcgccgcgtggatcgtgcgcgacacc
gcggacgtggaacgcatcgccaccctcgggccggaggtgctgggcctgactcgcgaccac
ctcgccgggatcctcgcgggcagcggcgcccgcatcaagaacctgctcaccgaccagcgg
gtgatcgccggcgtcggcaacgcctactccgacgagatcctgcacgtggcgaagctgtcg
ccgttcgcgacgtcgaagaacttgaccgacgagcaggtcaccgcacttcacgacgcgatc
cgctcggtcctgctcgacgcggtggcgcgcctcgaggggcaggaggcggcccgactcaag
gccgagaaacggaccggcctgcgggtgcacgcccggaccggcctgccgtgcccggtgtgc
ggggacacggtccgcgaggtgtcgttcgcggaccgctcgttccagtactgccccacctgt
cagacgggcggcaagatcctcgccgaccgccgcatgtcgcgactgctcaagtag
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