Gordonia phthalatica: ACH46_08270
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Entry
ACH46_08270 CDS
T04097
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
goq
Gordonia phthalatica
Pathway
goq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
goq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACH46_08270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
goq03019
]
ACH46_08270
03009 Ribosome biogenesis [BR:
goq03009
]
ACH46_08270
Enzymes [BR:
goq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACH46_08270
Messenger RNA biogenesis [BR:
goq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACH46_08270
Ribosome biogenesis [BR:
goq03009
]
Prokaryotic type
rRNA processing factors
ACH46_08270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
Motif
Other DBs
NCBI-ProteinID:
ALG84493
UniProt:
A0A0N9NAN0
LinkDB
All DBs
Position
1776613..1779876
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AA seq
1087 aa
AA seq
DB search
MTDNGSPADATADQSAEKFPLRLRVHALARTLGLTSKQVLAHLQEMGVTARTAQSSISRA
DAEAVELRISGAVETPAETPSAGGSDAPSADSPSADTAAQASLFSSVEKVEPVSVARSEA
TAPLFLSASQGEESAPSAKKAAKKADKPAKAEKSSKGEKANKHEKAEKAEKGDKPAKKSG
KKSGTKKTKKVAEETEPVEEISTEAVESETAVETAAVDTEPSVDASVEVDSAQAVAADAS
EADADTSDATDADQADGSKDEHGESRSRRRRRGRRGRGRGRGDQASENAENDGTEHSGSD
QSTSDEADAEQSDSDDGKPPSKDADAENGAAENGDAENGDAADAASTESGSGDDDNSGVP
SSKRRRRRRRRRGGSDGDDNASHDDPPNTVVHEREPRSKRVRDEVQGISGSTRLEAKRQR
RRDGRDAGRRRPPILTESEFLARRESVERVMVVRERSANSAINAAEPHAVPTEDYTQIAV
LEDGVLVEHFVTTETSQSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWEAA
GLDGGSRKIEQALKPGDHVLVQVSKDPIGHKGARLTTQISLAGRYLVYVPGGTSTGISRK
LPDTERKRLKQILAKLVPDEAGVIIRTASEGVSAEDLGSDIERLEAQWKSIEAAAEEHKA
KASGTPKALYEEPDLLVRVVRDLFNEDFRKLVIEGDRAWAQVSGYVGDVAPDLSERLEKF
EKDHADAPDSFNVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGN
LEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRH
QVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTACSGRGVIVHANPIEVRPSEDANRGGGDS
GSRRSRRSRRRGNDQPSQQQSSTQQHDNQNQASGQHADAQAKAPHKPAAEHPMFRAMAHG
EHPEQAADETVVVETTTVVEKTTVVEETAVVAKTEKAETVEKTVEKPVESAPQAPTGATR
RRRRAVRRTAGPTGAVEAAAETTSETVVDQAPVTTVAPQASEPIVAVKRSSRRRSGRRVA
GPPPTAE
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgataacgggtcgccggctgacgctacggcggatcagtcagcggaaaaattcccc
ctccgtctccgcgtgcacgcactcgcgcgcacgctgggactgaccagcaagcaggtgttg
gcgcacctgcaggagatgggggtgacggcgcgcaccgcgcagtcgtcgatctcgcgagcc
gacgcagaagccgtcgagctccgcatcagcggcgccgtcgagactccggcggagacgccg
agtgcaggcggctccgacgccccgagcgcagacagcccgagcgccgacaccgcagctcag
gcgtcgctcttctcctcggtggagaaggtggagccggtgtccgtcgcgcgcagcgaggcc
accgctccgctgttcctctccgcctcccagggcgaggagtctgcgccgtcggcgaagaag
gccgcgaagaaggctgacaagcccgcgaaggccgagaagtcgagcaagggcgagaaggcc
aacaagcacgaaaaggctgagaaggccgagaagggcgacaagcccgcgaagaagtcgggc
aagaagtccggtaccaagaagaccaagaaggtcgccgaggagaccgaacccgtcgaggag
atctcgaccgaggccgtcgagtcggagaccgcggtcgagacggccgccgtcgacaccgag
ccgtcggtcgacgcctccgtcgaggtcgactccgcacaggccgtcgcagcagacgcgagc
gaggccgacgccgacacgagcgatgcgaccgacgccgaccaggccgacggatcgaaagac
gagcacggtgagagcaggtcgcgtcgccgccgccgcggacgtcgcgggcgcggacgcgga
cgcggtgaccaggcgtcggagaacgccgagaacgacggaaccgagcacagcggcagcgat
cagtcgacgtcggacgaggccgacgccgagcagagcgactccgatgacggcaagcccccg
agcaaggacgcggacgccgagaacggtgccgctgagaacggcgacgctgagaacggcgac
gcagcggatgccgcgtcgaccgagtcaggctccggcgacgacgacaactccggtgtcccg
tcgagcaagcgccgtcgccgtcgtcgccgtcgccgcggtggatccgacggagacgacaac
gcatcgcacgacgatccgcccaacacggtggttcacgagcgtgagccgcgcagcaagcgg
gttcgcgacgaggtgcagggcatctccggttccactcgactcgaggccaagcgtcagcgt
cgccgtgacggtcgcgacgccggtcgtcggcgcccgccgatcttgaccgagtcggagttc
ctggctcgccgcgaatcggtggagcgcgtcatggtggtccgcgagaggtcggccaacagt
gcgatcaatgcggccgagccgcacgccgtcccgaccgaggactacacgcagatcgccgtc
ctcgaagacggcgtcctggtggagcacttcgtcaccaccgagacctcgcagtccatggtc
ggcaacatctacctcggccgcgtccagaacgtgctgcccggcatggaggccgcgttcgtc
gacatcggccgcggccgcaacggcgtcctgtacgccggtgaggtcaactgggaggccgcg
ggcctcgacggtggatcgcggaagatcgagcaggcgctcaagccgggcgatcacgtcttg
gtccaggtcagcaaggacccgatcgggcacaagggcgcacgcctgaccacgcagatctcc
ctggccggccgctacctggtgtacgtgcccggcggcacgtccaccggcatcagccgcaag
ctcccggacaccgagcgcaagcgcctcaagcagatcttggccaagctggtccccgacgag
gccggtgtcatcatccgcaccgcgtccgagggtgtcagcgccgaggacctcggttccgac
atcgagcgcttggaagcgcagtggaagagcatcgaggccgcagcggaggagcacaaggcg
aaggcgtcgggaactccgaaggccctctacgaagagcccgacctgctggtccgcgtggtc
cgcgacctgttcaacgaggacttccgcaagctcgtcatcgagggtgaccgcgcatgggcg
caggtctccggctacgtcggcgacgtggcacccgacctgtccgagcgactggagaagttc
gagaaggaccacgccgacgcgccggactccttcaacgttcaccggatcgacgagcagctc
gcgaaggcgctcgaccgcaaggtgtggctgccgtccggcggcacgctgatcatcgagcac
accgaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccgggtcgggcggcaac
ctcgaggagacggtcacccgcaacaacctggaggcggccgaggagatcgtgcggcagatg
cgcttgcgcgacatcggcggcatgatcatcgtcgacttcatcgacatggtcctcgagtcc
aaccgggatctggtcctgcgtcgactcaccgaggcgctcgctcgtgaccgcacccggcat
caggtctcggaggtcacttcgctgggcctggtgcagatgacccgcaagcggctgggcacc
ggactcctcgaagccttctcgaccacgtgcaccgcgtgctcgggtcgcggcgtgatcgtc
cacgcgaacccgatcgaggtccgcccgtcggaggatgcgaatcgcgggggaggcgactcc
gggtcgcgtcgctcgcggcggtcgcgtcgacgcggcaacgatcagccgtcgcagcagcag
tcgtccacacagcagcacgacaaccagaaccaggcgagcggacagcacgccgacgcgcag
gccaaggcaccgcacaagcccgccgccgagcatccgatgttccgcgccatggcgcacggc
gagcatccggaacaggctgcggacgagaccgtcgtcgtcgagacgacgacggtggtggag
aagacgacggtggtcgaggagaccgcggtcgtggcgaagaccgagaaggccgagacggtc
gagaagaccgtcgagaagccggtcgagtccgcaccgcaggcgccgaccggcgcgacccgt
cgtcgacgtcgtgcggtccgccgcaccgccggccccaccggtgcggtcgaagcggcggcc
gagaccacctcggagacggtcgtcgatcaggcgccggtgaccaccgtcgcaccgcaggcg
agcgagccgatcgtggccgtcaagcggtcctcgcggcgccgcagcggtcgtcgcgtggcg
ggcccgccgccgaccgcagagtga
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