Gordonia sp. KTR9: KTR9_1011
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Entry
KTR9_1011 CDS
T02216
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gor
Gordonia sp. KTR9
Pathway
gor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KTR9_1011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gor03021
]
KTR9_1011
03400 DNA repair and recombination proteins [BR:
gor03400
]
KTR9_1011
Enzymes [BR:
gor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KTR9_1011
Transcription machinery [BR:
gor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KTR9_1011
DNA repair and recombination proteins [BR:
gor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KTR9_1011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFR47656
LinkDB
All DBs
Position
1140607..1144257
Genome browser
AA seq
1216 aa
AA seq
DB search
MRWLPPVHLSILLRPLLRRVCCGDRRSQGVTSERPIKPRTAHLGCENVVLEGRILAVNRQ
STSTIPGAPHRASFAKISEPLEVPGLLDLQLDSFEWLVGSPEWRAKAIARGDENPTGGLE
DILHELSPIEDFSGSMSLSFSEPHFDEVKASVEECKDKDMTYAAPLFVTAEFINNNTGEI
KSQTVFMGDFPIMTEKGSFIINGTERVVVSQLVRSPGVYFDASIDKTTEKTLHTVKVIPG
RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGFTAEEITERFGFSEIMMSTLEKDNT
GNQDEALLEVYRKLRPGEPPTKESAENLLENLFFKDKRYDLARVGRYKVNKKLGLTGNPM
VGESTLTREDIIATVEYLVRLHEADPHTTTYMTVPGGVEVPVEVDDIDHFGNRRLRTVGE
LIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQN
NPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVY
ARVNPFGFIETPYRKVVDGVVTDEIEYMTADEEDRFLIGQANTNFDGNGRITDERVLVRK
KGSEVEFVGATDVEYLDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRNES
PLVGTGMELRAAVDAGDVIVSGKTGVVEEVSADYITVMSDDGTRDTYRMRKFARSNHGTC
ANQRPIVDEGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSQRLVE
EDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILV
GKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFSREDDDDLAP
GVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVP
RRMNIGQILETHLGWVAKAGWNINVAEGVPEWASRLPEDMYSAEPDTNTATPVFDGAREE
ELTGLLSSTLPNRDGEVMVNGDGKATLFDGRSGEPFPYPVSVGYMYIIKLHHLVDDKIHA
RSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDVVGRVKVY
EAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMHDTDDEDLERAAANLG
INLSRNESATVDDLAN
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
ttgcgctggctgcctcctgtccatctatcgatccttcttcggccactccttagacgtgtg
tgctgcggtgatcgccgatcccagggtgtcaccagcgaacggcccatcaagccacgtact
gcacatctaggttgtgaaaacgtcgtgttggaaggacgcatcttggcagtcaaccgccag
tccacctcaacaatccccggcgcgccgcatcgcgcgtcgtttgcaaagatcagcgagccg
ctggaggtcccaggcctcctcgacctccaactcgattcattcgaatggctcgtcggttcg
ccggagtggcgcgccaaggcgatcgcccgcggtgacgagaacccgaccggcgggctcgag
gacatcctccacgagctgtccccgatcgaggacttctccggttccatgtccctgtcgttc
tccgagccgcacttcgacgaggtcaaggcctccgtcgaggagtgcaaggacaaggacatg
acctacgcggcgccgttgttcgtcaccgcggagttcatcaacaacaacaccggcgagatc
aagtcgcagaccgtcttcatgggcgacttcccgatcatgaccgaaaagggcagcttcatc
atcaacggcaccgagcgtgtcgtggtgagccagctggtccgtagcccgggcgtgtacttc
gacgcctcgatcgacaagaccaccgagaagaccctgcacaccgtcaaggtgatcccgggt
cgcggtgcgtggctggagttcgacgtcgacaagcgcgacaccgtcggtgtgcgtatcgac
cgcaagcgccgtcagccggtcaccgtgctgctcaaggcgctgggcttcaccgccgaggag
atcaccgagcgtttcggtttctccgagatcatgatgtccaccctggagaaggacaacacc
gggaaccaggacgaggcgctgctcgaggtctaccgcaagctgcgtccgggtgagccgccg
accaaggagtccgcggagaacctcctggagaacctcttcttcaaggacaagcgttacgac
ctcgctcgcgtgggccgttacaaggtcaacaagaagctgggcctgaccggcaaccccatg
gtgggtgagtcgacgctgacccgcgaggacatcatcgcgaccgtcgagtacctggtgcgt
ctgcacgaggccgacccgcacacgaccacctacatgaccgtccccggtggagtcgaggtg
cccgtcgaggtcgacgacatcgaccacttcggcaaccgtcgcctgcgtaccgtcggcgag
ctgatccagaaccagatccgcgtgggcctctcgcgtatggagcgtgtcgtgcgtgagcgc
atgaccacccaggacgtcgaggcgatcaccccgcagaccctgatcaacatccgtcccgtc
gtggcggcgatcaaggagttcttcgggaccagccagctgtcgcagttcatggaccagaac
aacccgctgtcgggtctgacccacaagcgtcgtctgtcggcgctgggcccgggcggtctg
agccgtgagcgcgccggcctcgaggtgcgcgacgtgcacccgtcgcactacggccgcatg
tgtccgatcgagacccctgagggtccgaacatcggtctgatcggttcgctgtcggtgtac
gcgcgggtcaacccgttcggcttcatcgagacgccgtaccgcaaggtcgtcgacggtgtc
gtcaccgacgagatcgagtacatgaccgccgacgaggaggaccgcttcctcatcggacag
gcgaacaccaacttcgacggcaacggccgcatcaccgacgagcgtgtcctggtgcgcaag
aagggctccgaggtcgagttcgtcggcgcgaccgacgtcgagtacctcgacgtctcgccg
cgtcagatggtgtccgtcgcgaccgcgatgatcccgttcctcgagcacgacgacgccaac
cgcgccctgatgggtgcgaacatgcagcgtcaggccgtgccgctggtgcgcaacgagtcg
ccgctggtcggcaccggcatggagctgcgtgccgccgtcgacgccggtgacgtcatcgtg
tcgggcaagaccggtgtggtggaagaggtctcggccgactacatcaccgtcatgtccgac
gacggcacccgcgacacctaccggatgcgcaagttcgcgcgttccaaccacggcacgtgt
gccaaccagcgtccgatcgtggacgagggtcagcgcgtggagtccggccaggtcctcgcc
gacggcccctgcaccgagaacggtgagatggcgctcggcaagaacctgctcgtggcgatc
atgccgtgggagggtcacaactacgaggacgcgatcatcctgagccagcgtctcgtcgaa
gaggacgtgctcacctcgatccacatcgaggagcacgagatcgacgcccgcgacaccaag
ctcggtgccgaggagatcacccgggacatcccgaacgtctccgacgaggtgctcgccgat
ctcgacgagcgcggcatcgtgcgtatcggtgccgaggtccgcgacggcgacatcctggtc
ggcaaggtcaccccgaagggcgagaccgagctgaccccggaagagcgtctgctgcgcgcg
atcttcggtgagaaggcccgtgaggtccgcgacacctcgctgaaggtgccgcatggcgag
accggcaaggtcatcggcgtgcgcgtgttcagccgcgaggacgacgacgacctggctccc
ggcgtcaacgagctggtccgcgtgtacgtggcccagaagcgcaagatccaggacggcgac
aagctcgccggtcgtcacggcaacaagggcgtcatcggcaagatcctcccgcaggaggac
atgccgttcctgcccgacggaaccccggtcgacatcatcctgaacacccacggtgtgccg
cgtcgtatgaacatcggtcagatcctggagacccacctcgggtgggtcgccaaggccggc
tggaacatcaacgtcgccgagggtgtgccggagtgggcgtcgaggctgcccgaggacatg
tactcggccgagcccgacaccaacaccgccaccccggtgttcgacggcgctcgcgaggag
gagctgaccggactgctgtcctcgacgctgccgaaccgcgacggcgaggtgatggtcaac
ggcgacggcaaggcgacgctgttcgacggtcgttccggcgagccgttcccgtacccggtg
tcggtcggctacatgtacatcatcaagctgcaccacctggtcgacgacaagatccacgct
cgctcgaccggtccgtactcgatgatcacccagcagccgctcggtggtaaggcgcagttc
ggtggtcagcgtttcggtgagatggagtgttgggccatgcaggcctacggcgcggcgtac
acgctgcaggagctgctgaccatcaagtcggacgacgtggtgggccgcgtgaaggtctac
gaggcgatcgtcaagggcgagaacatcccggagccgggtatccccgagtcgttcaaggtg
ctgctgaaggagcttcagtcgctgtgcctgaacgtcgaggtgctgagctccgacggtgcg
gccatcgagatgcacgacaccgacgacgaggacctggagcgcgccgctgccaacctcggc
atcaacctgtcgcgcaacgagtcggccaccgtcgacgatctcgccaactga
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