Gordonia sp. KTR9: KTR9_1237
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Entry
KTR9_1237 CDS
T02216
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gor
Gordonia sp. KTR9
Pathway
gor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KTR9_1237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gor03400
]
KTR9_1237
Enzymes [BR:
gor01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KTR9_1237
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KTR9_1237
DNA repair and recombination proteins [BR:
gor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KTR9_1237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Arg_repressor_C
Motif
Other DBs
NCBI-ProteinID:
AFR47877
UniProt:
J9RH98
LinkDB
All DBs
Position
1403506..1404396
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AA seq
296 aa
AA seq
DB search
MPELPEVAAIADYVDGRAAGLPIRRVDVASLSVLKTADPPYTALMDRIVESVGRVGKYLV
IRTIPGSAATASEPLLQLVIHLSRAGWVRWSEDLSPKPLRPGGKSPIALRVHCGLPGEGF
DVTEAGTQKRLAVWLVRELTEVERIAGLGPDALELTAEQFAEILSGTTGRIKNVLTDQHT
IAGIGNAYSDEILHTARLSPFASSKTLKPDQVATLYDAMRGVLTDATGRLEGQAVARLKS
EKRTGLRVHARTGLPCPVCGDTVREVSFADRSFQYCATCQTGGKVLADRRMSRLLK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttccagaggtggccgcgatcgccgactacgtcgacggccgtgcggccgga
ctcccgatccgacgggtcgacgtcgcgtcgctgtcggtgctgaagaccgccgacccgccc
tacacggcgctgatggaccggatcgtcgaatccgtcggacgtgtggggaagtacctggtc
atccgtaccattccgggttcggcggccaccgcgtcagagccgttgctgcagctggtcatc
catctgtcgcgggcggggtgggtgcgatggagcgaggacctgtcgcccaagcccctgcgt
ccgggcgggaagagcccgatcgccctgcgggtgcactgcgggttgcccggtgagggattc
gacgtcaccgaggccggcacccagaagcggcttgccgtgtggctggtccgtgagctcacc
gaggtcgaacggatcgcgggtctgggacccgacgcgctcgaactgactgccgaacagttc
gcggagatcctgtccgggacgaccggccggatcaagaacgtactcaccgaccagcacacc
atcgccgggatcggcaacgcgtattccgacgagatcctgcacaccgcacgcctgtcgccc
ttcgcgtcgtcgaagacgctgaaacccgaccaggtcgccacgctctacgacgccatgcgt
ggcgttctcaccgatgcgaccggacggctggaaggccaggccgtggcgcggctgaagtcc
gagaagcgcaccggtctgcgcgtgcacgcccgcaccggcctgccgtgtccggtgtgcggc
gacaccgtccgcgaggtgtctttcgccgatcggtccttccagtactgcgccacgtgtcag
acgggtgggaaggtgctggctgatcggcggatgtcgcggttgctgaagtag
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