Gordonia sp. KTR9: KTR9_1920
Help
Entry
KTR9_1920 CDS
T02216
Name
(GenBank) DNA and RNA helicase, Superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gor
Gordonia sp. KTR9
Pathway
gor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KTR9_1920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gor03019
]
KTR9_1920
03009 Ribosome biogenesis [BR:
gor03009
]
KTR9_1920
Enzymes [BR:
gor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KTR9_1920
Messenger RNA biogenesis [BR:
gor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KTR9_1920
Ribosome biogenesis [BR:
gor03009
]
Prokaryotic type
rRNA helicases
KTR9_1920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
AFR48559
LinkDB
All DBs
Position
2174335..2176107
Genome browser
AA seq
590 aa
AA seq
DB search
MSTSDHGEHDAPADPSVGSFDDLEIDPRVRAAVTDVGYETPSPIQAATIPTLLSGRDVVG
LAQTGTGKTAAFAIPILSRLDTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLP
IYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDRKTLDISGLEFLVLDEADEMLTMGFAE
DVERILAETPDTKQVALFSATMPSAIRRLAQKYLNSPQEITVKSKTATAQNITQRYLQVS
HQRKLDALTRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTI
NQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLF
VSPRERHLLRAIERATRQTLTEIGLPSVDDVNAQRVAKFADSITQNLSSENLDLFRGLIE
NYARDNDVTMADIAAALALETRDGGFLMTPDPPQSEKRPERERAPRRPGASFATYRIAVG
RKHKVSPGAIVGAIANEGGLTRADFGNISIRDDFSLVELPDDLDNETLSNLRHTKIGKNP
IDIRKDMGSPRTRGGAKRGAGGHGGGRDGRRGDSWGKRPSPRVAGRGRHS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttccgatcacggcgagcacgacgccccggccgacccttctgtcggctcgttc
gacgacctcgaaatcgatccgcgggtccgcgccgccgtcaccgatgtcggctacgagacg
ccgtcgccgatccaggcggccaccatcccgaccctcctgtcggggcgcgacgtggtgggc
ctggcgcagaccggcaccggtaagaccgcggccttcgccatccccatcctgtcccggctg
gacacctcggcgcggacgccgcaggccctgatcctggcgccgacacgagaactggccctg
caggtctccgaggccttcggccgctactcggcgcacatgcccgaggtgaaggtcctgccg
atctacggcgggcagtcctacggcgtccagctcgccggtctgcgtcgtggcgcgcaggtc
atcgtcggcacgcccgggcgcgtcatcgatcacctcgaccgcaagaccctcgacatctcg
ggactcgagttcctcgtcctcgacgaggccgacgagatgctgacgatgggcttcgccgag
gacgtcgagcgcatcctggccgagaccccggacaccaagcaggtcgcgctgttctcggcg
accatgcccagtgccatccgccgtctcgcacagaagtacctgaactctccgcaggagatc
acggtcaagtcgaagaccgcgaccgcgcagaacatcacccagcgctatctgcaggtctcc
caccagcgcaagctggacgcgctgacgcggttcctcgaagtcgagaccttcgacgccatg
atcgtgttcgtccgcaccaagcaggcgaccgaggagctggccgagaagctgcgttcccgc
ggattctccgcggtcgcgatcaacggcgacctcgcccaggcgcagcgcgaacgaacgatc
aaccagctcaagaacggttcgatcgacatcctcgtcgcgaccgacgtcgccgctcgcgga
ctcgacgtggaccgcatctcgcacgtcgtcaactacgacatcccgcacgacaccgagtcg
tatgtgcaccgcatcggccgcaccggtcgtgccggccggtcgggcaatgcgctgctgttc
gtctcgccgcgcgagcgtcacctgctacgcgcgatcgaacgcgccacccggcagacgctc
accgagatcggcctgcccagtgtcgacgacgtcaacgcccagcgggtggcgaagttcgcc
gactccatcacgcagaacctgtcgtcggagaacctcgacctgttccgcgggctgatcgag
aactacgcgcgggacaacgatgtcacgatggccgacatcgccgcagcgctggcactcgag
acgcgggacggcgggttcctgatgaccccggacccgccgcagtccgagaagcgcccggag
cgtgagcgtgctccgcggcgccccggcgcgagcttcgcgacgtaccggatcgccgtcggc
cgcaaacacaaggtctcgcccggcgcgatcgtcggtgccatcgccaacgagggcggcctg
acccgcgccgacttcggcaacatcagcatccgcgacgacttcagcctcgtcgaactgccc
gacgacctcgacaacgagaccctgtccaatctgcggcacacgaagatcggcaagaatccg
atcgacatccgcaaggacatggggtcgccgcgcacacgtggtggtgcgaagcgcggcgcc
gggggtcacggaggcggacgagacggtcgtcgcggtgacagctggggcaagcgtccgtcg
ccgcgcgtggccggccgcggtcgtcattcctga
DBGET
integrated database retrieval system
