Gordonia sp. KTR9: KTR9_1986
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Entry
KTR9_1986 CDS
T02216
Name
(GenBank) Ribonucleases G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gor
Gordonia sp. KTR9
Pathway
gor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KTR9_1986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gor03019
]
KTR9_1986
03009 Ribosome biogenesis [BR:
gor03009
]
KTR9_1986
Enzymes [BR:
gor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KTR9_1986
Messenger RNA biogenesis [BR:
gor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KTR9_1986
Ribosome biogenesis [BR:
gor03009
]
Prokaryotic type
rRNA processing factors
KTR9_1986
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
AFR48623
LinkDB
All DBs
Position
2265075..2268548
Genome browser
AA seq
1157 aa
AA seq
DB search
MHALARFLGLTSRQVLAHLANLGVQTRSPQSSVDRDLAKAVAERVRAGVDENAETPAQTV
PADTPTEAPSAEPAPAETGSAEITSADPEPTAVEPTPTPADEPTQTPADDASSTPPAAEA
PTLFSAASAQYDAPVASSAGEADTSAGVQPLFLQPQAPAEKPRTARSGRAKPKVETSASG
DANAEDESAGTAAPEAAATPESGDEPASARGREASASEATAGEATTDDSNAGSSTPDDTD
DSNGDDSADDSNNDDSNGDDSGSGRSRRRRRGRRGRGRGRGDQGADGESDTDDSDADESD
TDDADDSAVTDGRGAEATRESDSTAGETDSDDTSADDESSDESRSEEGRPSGKRTRRRSR
RSGSDKSGDAESSSSSGDRADEATDDSDTTDESDDDASGDDDSGDSSSTRRRRRRRRRKG
GGESEEVSPDDPPNTVVHEREPRSKRARDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPI
LTESEFLARREAVDRVMVVRERSANSRISGNDGHEHAAVEDYTQVAVLEDGVLVEHFVTT
ATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWDAAGLDGGSRKIEQAL
KPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQIL
AKLVPDEAGVIIRTASEGVSAEELGADIARLESQWKTIDEAVTQAKKGGSSNPKPLYEEP
DLLVRVVRDLFNEDFKKLVVEGDKAWNLVEGYVGSVASDLMERVEKFEKPHADAPDSFVV
HRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAA
EEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQM
TRKRLGTGLLEAFSTTCTACSGRGIIVHSNPVEVKSDDSARAEGSGSKRSRRGKKKADAQ
PEAAPAVAPAHKPAEHPMFRAMAAHSHDDEHDEAHGGPHPDGDSAHRSEGDTAPTVEASE
QSAAGAGTDTSGDHTAAAPDVPEPVVSAPVVSEPAATEAAVTEPAATESADAESAGTSSD
GQAPAAARRRRRVVRRPAQTTTAPENVVMTAVDVVPDTPTTTFGPVSSGTGEAAVAVRRR
PRKRSAGRPAGPPPAED
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgccctggcgcgtttcttgggcctgacgagtcgacaggtactggctcacctggcg
aatctcggcgtgcagacccgcagcccacaatccagcgtcgaccgcgacctggcgaaagcc
gtggcggaacgagttcgggccggcgtcgacgagaacgccgagacgcctgcgcagacagtg
ccggccgacaccccgaccgaggcgccctcggcggagcccgcaccggccgagaccggatca
gccgagatcacgtcggccgatccggagccgaccgcggtcgagccgacaccgacccccgcg
gacgagccgacacagacccccgcggacgacgcctcatcgacaccgccggcggccgaggcc
ccgacactgttctcggcggcgtcggcgcagtacgacgcgcccgtggcatcttctgccggc
gaggccgacacgtctgccggcgtgcagccgctgttcctgcagccgcaggcaccggccgag
aagccccgcaccgcccgctcggggcgcgccaagcccaaggtcgaaacgagcgccagcggc
gacgcgaacgccgaggacgaatcggccggcactgccgcccctgaggccgccgcgaccccg
gaatccggggatgaacccgccagcgcgcggggtcgcgaggcgtcggcgtccgaggcgaca
gcgggcgaggcgacgaccgacgattcgaacgccggcagctcgacccccgatgacaccgac
gattcgaacggcgacgactctgccgacgattcgaacaacgacgactcgaacggcgacgac
tcgggttcgggtcggagtcgccggcgccggcgcggtcggcgagggcgcgggcgaggtcgg
ggagaccagggcgcggacggcgagtccgacacggacgactcggacgccgacgagtcggac
acggacgacgcagacgactccgccgtcaccgacgggcggggcgccgaggcgacccgcgag
tccgacagcaccgccggcgagaccgattccgacgacacctccgccgacgacgagtcgtcc
gacgagtcgcgctcggaggaaggccgcccgtcgggcaagcgcacacggcgccgcagccgc
cggtcgggttcggacaagtcgggtgacgccgagtcctcgagctcgtcgggcgaccgtgcc
gacgaggccaccgacgactccgacaccactgacgagtcggacgacgacgcctccggtgac
gatgactccggcgattcgtcgtcgactcgtcgccgtcgtcgccgtcgccgtcgcaagggt
ggcggcgaatcggaagaggtgtctcccgacgatccgccgaacaccgtcgtccacgaacgc
gaaccgcgcagcaagcgcgcccgtgacgaggtccaggggatctcgggatcgacgcggctg
gaggccaagcgtcagcgtcgccgcgacgggcgcgatgccggccggcgtcggccaccgatc
ctgacagagtcggagttcctggcgcggcgcgaggcggtcgaccgggtcatggtcgtccgc
gaacgcagcgccaacagccgcatctccggaaacgacgggcacgaacacgccgcggtcgag
gactacacccaggtcgcggtcctcgaggacggcgtcctcgtcgaacacttcgtgaccacc
gcgacatcgtcgtcgatggtcggcaacatctatctcggtcgggtccagaacgtcctgccg
ggcatggaggccgcattcgtcgacatcggccggggacgcaacggtgtcctgtacgcgggt
gaggtcaactgggacgccgccggactcgacggtggttcgcgcaagatcgagcaggcgctc
aagccgggcgacaacgttctcgtgcaggtcagcaaggacccggtggggcacaagggcgcc
cgactgaccacgcagatctcgctggccggccgctacctggtgtacgtgccgggtggttcg
tcgacggggatcagccgcaagctgcccgacgtcgagcgcaaacgtctcaagcagatcctg
gcgaagctcgtccccgacgaggccggggtcatcatccgcaccgcctcggagggagtcagc
gccgaggaactcggtgccgacatcgctcgtctcgagtcgcagtggaagaccatcgacgag
gcggtcacacaggccaagaagggcgggtcgtcgaacccgaagccgctgtacgaggagccc
gacctcctggtgcgcgtggtccgagacctgttcaacgaggacttcaagaagctcgtcgtc
gagggcgacaaggcctggaacctggtcgagggttacgtcggctcggtggcctcggatctg
atggagcgcgtcgagaagttcgagaagccgcatgccgacgcgccggattcgttcgtggtg
caccgcatcgacgagcaactcgcgaaggccctcgaccggaaggtgtggctgccctccggc
ggcacgctgatcatcgagcacaccgaggcgatgaccgtcgtcgacgtcaacaccggcaag
ttcaccggctcgggcggcaacctcgaggagaccgtgacgcgcaacaacctcgaggccgcc
gaggagatcgtgcggcagatgcggttgcgcgacatcggcggcatgatcatcgtcgacttc
atcgacatggtcctcgagtccaaccgggacctggtgctgcgcaggctgaccgaggccctc
gcccgtgaccgcacgcgccatcaagtgtccgaggtgacctcgctcggcctcgtccagatg
acccggaagcgtctgggaaccggtctgctcgaagcgttctcgaccacctgcaccgcgtgc
agcggccggggcatcatcgtgcactcgaatcccgtcgaggtgaagtccgacgactccgca
cgcgcggagggttcggggtcgaagcggtcacgccggggcaagaagaaggccgacgcacag
cccgaggccgcaccggccgtcgcgcccgcccacaagcccgccgaacatccgatgttccgg
gcgatggcagcgcactcccacgacgacgaacacgatgaagcccacggcggaccacacccc
gacggcgactctgcgcatcgttccgagggtgacacggcgccgacggtcgaggcgtccgag
caatcggccgcgggggccgggacagacacctccggggaccacacggccgccgcgcccgac
gtcccagagcccgtcgtctcagcgcccgtcgtctcggagcccgccgcgacagaggctgcc
gtcacggagccggcggcgacggaatcggcggacgccgagtctgccggtacgtcgtccgac
ggtcaggctccggcggccgcacggcgtcggcgccgggttgtccggcgtcccgcgcagacg
accacggcacccgagaacgtggtgatgaccgcggtcgacgtggtcccggacaccccgacc
acgaccttcggtccggtgtcgtccggcaccggtgaggcggccgtcgcggtccggcgccgg
ccgcgcaaacgcagcgccggccgtccggcgggaccgccgccggccgaggactga
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