Gordonia sp. KTR9: KTR9_2178
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Entry
KTR9_2178 CDS
T02216
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gor
Gordonia sp. KTR9
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gor03016
]
KTR9_2178
Enzymes [BR:
gor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KTR9_2178
Transfer RNA biogenesis [BR:
gor03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KTR9_2178
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lipase_GDSL_2
LPG_synthase_C
Motif
Other DBs
NCBI-ProteinID:
AFR48815
UniProt:
J9S7G5
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All DBs
Position
complement(2470536..2471813)
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AA seq
425 aa
AA seq
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MNDPAPDEPATDEPAPEITPLLRPAGGVPPVLATATEFADAAAALAAGSGPIAVDTERAS
GYRYSQRAYLIQIKRRGSGSFLLDPIGDPAALAPVIGALRGPEWVLHAADQDLPCLRELG
FECVELYDTELAGRLLGLAKVNLAAMVAEFLGLGLLKGHGAADWSRRPLPDEWLNYAALD
VEVLVELRDAMDAALAAEGKDGWAREEFAYILTRPPAPPRTDRWRKTSNIHTVKSTRALA
AVRELWTAREELAQRRDVAPGRVLPDTAIVNAATVNPESIADLTKLPVFGGPRQRRQAGI
WLSALQRAREIPDSKLPSRKTTGPGLPPVSRWDQRNPEAAARLQAVRPALKEIADAHTLP
VENLLAPDVVRQLCWDGLPEPITTEALDAHLAAAGARAWQRTLCAEALTQALLEAARPGT
TAAGE
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgatcccgcccccgacgaaccggccaccgacgaaccggctccggagatcaccccg
ctgctccggccggccggcggtgtgccaccggtgctggcgaccgccaccgaattcgccgac
gcggcagcggctctcgcggcgggtagcggcccgatcgccgtcgacaccgaacgcgcgtcg
ggctaccgctactcccaacgggcctatctgatccagatcaaacgacgcgggtcgggcagc
ttcctgctggacccgatcggcgatcccgccgcactggcaccggtgatcggcgcgttgcgg
ggcccggaatgggtgctgcacgccgccgatcaggacctcccctgcctccgcgaactcggc
ttcgagtgcgtcgagctgtacgacaccgagctggccgggcgtctcctgggcctggcgaag
gtcaatctggcggcgatggtggcggaattcctcgggctgggcctgctcaagggtcatggt
gccgccgactggtctcgtcgtcccctgcccgacgagtggttgaactacgccgcactcgac
gtcgaggtcctcgtcgaactgcgtgacgcgatggacgccgcactcgccgccgagggcaaa
gacggatgggcgcgtgaggaattcgcctacatcctgacccgcccgccggcaccgccgcgt
accgaccggtggcgcaagacctcgaacatccacaccgtcaagtccacgcgggcgctggca
gcggtacgcgaactgtggaccgcgcgcgaggaactggcgcagcgccgggatgtggcgccc
ggacgcgtcctgcccgacaccgcgatcgtcaacgcggcgaccgtcaaccccgagtccatc
gccgacctcacgaagctgccggtcttcggcggcccgcgccagcggcgccaggccggcatc
tggctgtcggcattgcaacgggcccgcgagatccccgacagcaagctcccgtcgcgcaag
acgaccggaccgggcctgcctccggtcagccgctgggatcagcggaatccggaggccgcg
gcacgactgcaggcggtccggccggcgctgaaggagatcgccgacgcccacaccctgccg
gtggagaacctgctcgcacccgatgtggtccggcaactgtgctgggacggcctgcccgag
ccgatcacgaccgaggcgctcgacgcgcacctggccgcggcgggcgcccgcgcgtggcag
cgaaccctctgtgccgaggcgttgacccaggccctcctcgaggcggcccgaccagggacg
accgcggccggcgagtag
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