Gordonia sp. KTR9: KTR9_3041
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Entry
KTR9_3041 CDS
T02216
Name
(GenBank) Nuclease subunit of the excinuclease complex
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
gor
Gordonia sp. KTR9
Pathway
gor03030
DNA replication
gor03430
Mismatch repair
gor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KTR9_3041
03430 Mismatch repair
KTR9_3041
03440 Homologous recombination
KTR9_3041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gor03032
]
KTR9_3041
03400 DNA repair and recombination proteins [BR:
gor03400
]
KTR9_3041
Enzymes [BR:
gor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KTR9_3041
DNA replication proteins [BR:
gor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KTR9_3041
DNA repair and recombination proteins [BR:
gor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KTR9_3041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DEDDh_C
RNase_H_2
UVR
Motif
Other DBs
NCBI-ProteinID:
AFR49676
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Position
3513098..3514900
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AA seq
600 aa
AA seq
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MTQTSVAGSSAGQLTFADLEAADQGDTGESSNEFSDRSLFDTTLVVVDLETTGSDPARDR
ITEIGAVKIRGGEIIGEFATLVDPGRPIPPQIVTLTGITTAMLTDAPRIESVLPSFFEFA
RGSILVAHNARFDMGFLRQNAIRLQLPWTFSLSLCTVTMARRILTRDEAPTVKLSALADL
FDVSVRPTHRALDDARATVEVFHRLLERVGNQGIATVGDLTSYLPRTDPRLRAKRGLADR
IPSRPGVYLFRGPSDEVLYVGTAVDLRRRVRSYFTGGDPRRRIAEMVLLAQRVDIVECSH
PLEAAVRELRLLGAHAPAYNRRSTQPHKGWWVTLTEERFPRLKVSRTPTDESIGPVGNRT
GAATVADVISTAAGLRTCTKRLGANGYHWCPDADGRRRPGSCRAATAQPQTVPDYSPRVT
AARRLMRGEADELLDGLTARLADLAQAHMFETAARHRDRLALTIDTLARCQRLAALCAIA
EIVVARPDGERGWQFAVIRHGRLAAAGRARRGVSPMPVVDALVAAAETVVPGDGPLRGAP
AEEVGLVYRWMTEPGARIVATSEPVALPAYSAERRLDWSRSAHDARTARPATEPRVRQAS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcagaccagcgtggccggctcctccgcggggcagctcaccttcgccgacctggag
gccgccgatcagggggacaccggcgagtcgtcgaacgagttcagcgaccgctcactcttc
gacacgaccctcgtcgtcgtagacctcgagaccaccggctccgatccggcccgtgaccgg
atcacggagatcggcgcggtgaagatccgtggcggcgagatcatcggcgagttcgcgacc
ctggtcgaccccggtcgacccatcccgccccagatcgtcaccctcaccggcatcaccacc
gcgatgctgaccgacgcaccgcggatcgagtcggtactgccctcgttcttcgagttcgcc
cgcggctcgatcctggtggcccacaatgcccggttcgacatgggcttcctgcgccagaac
gcgatccggctccagctcccgtggacgttcagcctgagtctgtgcacggtgaccatggcc
cggcgcatcctcacgcgcgacgaggcgcccacagtcaagctcagcgccctcgccgacctg
ttcgacgtctccgtgcgccccacgcaccgggcactcgacgatgcccgcgccacggtggag
gtcttccaccggctcctcgagcgcgtcggcaaccagggcatcgccaccgtcggcgacctg
acgtcctatctgccgcggaccgacccgcgactccgggccaaacgcggtctcgccgaccgc
atcccctcgcgtcccggcgtctacctcttccgcggcccgtccgacgaggtcctctatgtc
ggtaccgcggtggacctacgccgtcgggtccggtcgtatttcaccggtggcgacccccgc
cgccgcatcgccgagatggtgctcctcgcgcagcgggtcgacatcgtggaatgctcccac
ccgctcgaggctgcggtacgcgaactgcggctgctcggcgcacacgcgccggcgtacaac
cggcggtcgacacagccgcacaagggatggtgggtcaccctgaccgaggagcggttccct
cgtctgaaagtcagccgcacacccaccgacgagtcgatcggcccggtcgggaatcgcacc
ggtgcggcgaccgtcgccgatgtgatctcgacggccgccggtctccgcacgtgtacgaag
cggctcggcgccaacggttaccactggtgtcccgatgccgacgggaggcgacgccccggg
tcgtgccgagcggccaccgcgcagccgcagacggtccccgactactccccgcgggtcacc
gcggcccgccgactcatgcggggtgaggccgacgaactcctcgacgggctcaccgcacgc
ctcgccgacctcgcgcaggcccacatgttcgagaccgcggcacgccatcgggaccggctc
gcgctcacgatcgacaccctcgcccggtgtcagcgactggccgcgttgtgcgcgatcgcc
gagatcgtcgtcgcgcggcccgatggcgaacggggatggcagttcgcggtgatccggcac
gggcggctcgcggcggccggacgcgcgcgacgcggcgtctcccccatgcccgtcgtcgac
gcgctggtcgccgcggccgagaccgtggtgcccggagacggtccgctgcgcggcgcgccc
gccgaggaggtggggctcgtctaccgctggatgaccgaaccgggcgcgcggatcgtcgcg
accagtgagccggtcgcgctgccggcctactcggccgaacgacgcctcgactggtcgcga
tcagcgcacgacgcgcgcacggccaggcccgccacggaacctcgcgtgcgacaggcgagc
tga
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