Gordonia sp. KTR9: KTR9_4500
Help
Entry
KTR9_4500 CDS
T02216
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gor
Gordonia sp. KTR9
Pathway
gor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KTR9_4500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gor03400
]
KTR9_4500
Enzymes [BR:
gor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KTR9_4500
DNA repair and recombination proteins [BR:
gor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KTR9_4500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFR51104
UniProt:
J9SQC7
LinkDB
All DBs
Position
5147970..5150351
Genome browser
AA seq
793 aa
AA seq
DB search
MAGGEILEVDGRRISITNLSKVLYPATGTRKFEVIDYYSRIADVLLPHVRNRLITRKRWP
NGVESTPFFEKNVPESAPEWIRRHGIQHSERVISYAMADDRATLVWLAQMAVLEIHTPQW
RLPMGPDGAPMANRIVFDLDPGPRVPLHRTAEVACEIRNWLGGATTYPVTSGGKGIHLYA
RLPKPVTSDAARKVAQEVANEFARQHSDFITAKMSKSLRDDKVFIDWSQNNAAKTTLAPY
SLRGREQPWVAAPRTWEEMEDPKLSQLLYTEVLDRVDEFGDLLDGLDDPYRDADDGGSEP
VVEPAAGQVINLKEYRRKRDQSKTPEPFGDEVYRQRVESESPSDEPDSTDSPTDRAPIFV
IQEHHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAG
EYGGGHVSIWDKGTFELEKWRDKEVIVRLHGERVQGRYALIRTGEKNWLAHLMSDEPRPI
VPDSLTDPRPMLATDESIDGLNGRDWAFEGKWDGYRLLIRSVGGDFRLTSRSGIDMTADF
PELAGLADDLGLMDVVLDGEVVAIDSSGRTNFTLLTSRRHTDEPYALRLHLFDILFLNGS
SLLRKPWSVRRELLEELAPAFRNSAFVEVPPLLPGPGSAAVEYSREHNLEGVVAKRRNSV
YQQGRRSTTWLKHKNWSDIEVVVGGYRPGRGNRAHTIGSLLIGLPEETGLRYVGRVGTGF
TDAQLRSLAEELGPLEISRSPFLDKLDRPVESSAVWVLPKIVGEVRFMDWTTAGHLRHPS
WRGIRRDKLPGDL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggcgagattctggaggtcgacggccgccggatctcgatcaccaacctctcg
aaggtgctctatccggcgaccgggacccgcaagttcgaggtcatcgactactactcgcgc
atcgccgacgtcctcctcccccatgtacgcaatcgcctgatcacccgcaagcggtggccc
aacggcgtcgaatcgaccccgttcttcgagaagaacgtccccgagagcgcgcccgaatgg
attcgacgccacggcatccagcacagtgaacgggtcatctcctatgcgatggccgacgac
cgcgccacgctggtctggctcgcccagatggccgtgctcgagatccacacaccgcagtgg
cggctccccatggggcccgacggagcgcccatggccaaccgcatcgtcttcgacctcgat
cccggtccacgggtgccgctgcaccggaccgcggaggtcgcgtgcgagatacgcaactgg
ctcggcggggcgaccacctacccggtgaccagcggcggaaagggcatccacctctacgca
cggcttcccaaacccgtgacgtccgacgcggcgcgcaaggtggcacaagaggtcgccaac
gagttcgcgcgccagcacagcgatttcatcaccgccaagatgtccaagtcgctgcgcgac
gacaaggtcttcatcgactggagccagaacaacgccgccaagaccaccctcgccccctac
tcgctgcgtggtcgcgagcaaccgtgggtggcggcgccgcgcacctgggaggagatggag
gacccgaagctctcccagctgctctacaccgaggtgctcgaccgggtcgacgagttcggc
gatctcctcgacggtctcgacgacccctaccgcgacgccgatgacggcgggtcggaaccc
gttgtcgagcccgcggcgggccaggtcatcaatctgaaggagtaccggcgcaagcgcgac
cagtcgaagacgcccgagcctttcggcgacgaggtgtaccggcagcgcgtggagtccgag
agtccctccgatgagcccgattccacggactccccgacggaccgggcaccgatcttcgtg
atccaggaacaccacgcccgacgcctgcactacgacttccgcctcgagcacgacggcgtc
ctggtgtcgtgggcggtgccgaagaacctgcccaccgatcccgatcagaaccggctcgcg
gtgcagaccgaggaccaccccatggactacgccgacttcgaaggcgacatcccggcgggc
gaatacggcggcgggcacgtgtccatctgggacaagggcacattcgagctcgagaagtgg
cgggacaaggaggtcatcgtccgcctgcacggcgagcgcgtccaggggcggtacgcgctg
atccgaaccggggagaagaactggctcgcccacctcatgagcgacgagccgcggccgatc
gtccccgacagcctcaccgatccacgcccgatgctcgcaaccgatgagtcgatcgacggt
ctcaacggccgcgactgggcgttcgaggggaagtgggacgggtaccggttgctcatccgc
tcggtcggcggcgacttccggctcacctcccgatcaggcatcgacatgaccgccgacttc
cccgaactcgccggtctcgcagacgatctcgggctcatggacgtggtactcgacggcgag
gtcgtcgccatcgactcctccggacgcaccaacttcaccctcctgacctcgcgccggcac
accgacgagccgtacgcgctgcggttacacctgttcgacatcctgttcctcaacggctcg
tcgctgctgcgcaagccgtggtcggtccggcgcgagctcctcgaggaactcgcacctgcg
ttccgcaactccgccttcgtcgaagttccgccgctgctccccggcccgggatcggccgct
gtcgagtacagccgcgaacacaatctcgaaggcgttgtcgccaaacgccgcaactcggtg
taccagcaggggcgccggtcgacgacctggctgaagcacaagaactggagcgacatcgag
gtcgtcgtcggcggatatcgaccggggcgcggcaaccgcgcgcacaccatcgggtccctg
ctgatcggtctgcccgaggagacgggactgcgctacgtcggtcgggtcggcaccggtttc
accgacgcccagctgcgttcgctcgccgaggaactcggcccgttggagatctcgcggtcg
ccgttcctggacaaactcgaccgcccggtcgagtcgagtgcggtgtgggtgctccccaag
atcgtcggcgaggtccgtttcatggactggacgacggccgggcacctgcgtcaccccagc
tggcggggaatccgccgggacaaactgcccggtgacctctga
DBGET
integrated database retrieval system