Gordonia sp. KTR9: KTR9_4918
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Entry
KTR9_4918 CDS
T02216
Name
(GenBank) Single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gor
Gordonia sp. KTR9
Pathway
gor03410
Base excision repair
gor03430
Mismatch repair
gor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KTR9_4918
03430 Mismatch repair
KTR9_4918
03440 Homologous recombination
KTR9_4918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gor03400
]
KTR9_4918
DNA repair and recombination proteins [BR:
gor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KTR9_4918
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KTR9_4918
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KTR9_4918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADK68999
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All DBs
Position
pGKT2:complement(153345..155384)
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AA seq
679 aa
AA seq
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MTTPAEHVLDNVISVARNFSSRRPFDIIRERKGWDTDVIERLEVSTDEPLPDLDLSVELI
HRAISQGRTITVLTDYDMDGVAAGILTYAGLAELGAHVELVIPHYEGPREITAPKVDQAL
AQYPTTSLLITCDVGINSNEGIDRAHDRGVAVIVTDHHIQTVDVCRADAVVDPNRTGATY
PEPDICGSQVALHILSAYARTHCPTKATAIAMLSVFGGIGGLADVMPLRGQTRALVRRAV
GLLALAVPDVPVYTKADADRDENPIKWHQIGQWNLEEPDRIDPNTSTLMQIVNGQSHDRR
YREALRGLSVLLSRLIAAGKVRSVDDLDVSFLGFTLTPMFNATRRVEADMADSFMVFVPE
AVRSSRPDYHPEVFDTYEHLDAGRRSAADTLVANNETRKELTKAAMEGIFAAEQPYAPYL
WFSDAKPGVLGLLASNLLQETSMPTMVINPETLSGSARAPEWFDVLGFVSQMNDPRLRAQ
GHHQACGVGFTDTHALAELIAAIAVYVDSLPEVDPEDQRADLHMMDIESLAQLDMESAEV
LVRLRPDIPLPMAPELISLAESLSVLGPFGQGFPAADIRLTFQPASASIKLMSRKEEAGE
LQKGQAPEPADYKHLKVVTGHGLELLWWNKADQYQALSDATLVTATIELSTNLFMGNTRP
QAFISSLVVHTVRQARGAA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgaccactccggccgagcacgtgctcgacaatgtcatttcggtggcacgcaatttctca
tcccgccggcccttcgacatcatccgggagcgcaagggctgggacaccgacgtcatcgaa
cgactcgaggtctccaccgacgaacccctccctgacctggatctcagcgtcgaactgatc
caccgtgcgatttcgcagggtagaaccatcacagttctcaccgactacgacatggacggc
gtcgccgccgggatcctgacctacgcagggttggccgagcttggggcgcacgttgagctg
gtgatcccacactatgaagggccacgcgagatcactgccccgaaagtggatcaggcactg
gcccagtacccaacaacgtcgctgctcatcacttgcgacgttggcatcaactcgaacgag
ggcatcgaccgcgcacacgaccgcggcgtcgcggtcatcgtcaccgaccaccatattcag
accgtcgatgtatgccgcgctgacgcggtcgtcgaccccaaccgaacgggggctacctac
cccgagcccgacatctgcggatcgcaagtggctctgcacattctgagcgcgtacgcgcgc
actcactgcccgaccaaagccaccgcaatcgcaatgctgtcggtgttcggagggattggc
gggctcgccgacgtgatgccgttgcgcggacagacccgggcactggtccgtcgcgccgtc
ggcctgcttgctctggctgtccccgacgtgcctgtctacaccaaggcggacgccgatcgc
gacgagaatccgatcaagtggcaccagatcggccaatggaacctcgaggagccagatcgc
atcgacccgaacacctccacactgatgcagatcgtcaacgggcaaagtcatgaccgccga
taccgtgaagcgctacgcggtctgtcggtgctcttgtcgcggctcatcgctgccggcaag
gttcgttccgtcgacgatctggacgtgtcgttcctcggtttcacgctgacgccgatgttc
aacgcgacacgtcgagtcgaagcggatatggccgactctttcatggtgttcgtccctgaa
gctgtgcgctcgtcgcggcctgactaccatccggaagtcttcgacacctacgagcacctc
gacgccggccgccggtctgccgccgacaccttggtcgccaacaacgagacccgcaaagag
ctcacgaaggctgcgatggaagggatttttgcggccgagcagccttacgctccgtacctc
tggttttcagacgccaagcccggggtgctcgggttgctggcatcgaaccttctgcaagaa
acctcgatgccgacgatggtcatcaaccccgaaacgctgtccgggtccgcgcgtgcgccc
gaatggttcgatgtgctggggtttgtctctcagatgaacgaccctcgacttcgtgcccaa
gggcaccatcaggcatgcggtgtcggcttcactgatactcacgctctcgccgagctgata
gcggctattgcggtctacgtggactcccttcccgaggtcgaccctgaggaccagagagcg
gatctccacatgatggacatcgagtctctcgcacagctcgatatggaatccgcggaggtt
ctcgttcgcttgcgccccgacattccgctgccgatggcgccagagctcatctcgctcgct
gagtctctcagcgtgctaggcccattcgggcaaggcttcccggccgctgacatccgtctc
accttccagccggccagcgcatcaatcaagctgatgagtcgcaaggaagaggctggtgaa
ctgcagaagggacaggcacccgagcctgccgactacaagcacctgaaggtggtcaccggc
catggactcgaactgctgtggtggaacaaggccgatcagtatcaagccttgtctgacgcc
acactcgtaaccgccacgatcgaactgtcgaccaacctgttcatgggcaacactcgtcca
caggcattcatatcctccctcgtcgtccacactgtgaggcaggctcgcggcgctgcgtag
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