Gordonia sp. KTR9: KTR9_5321
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Entry
KTR9_5321 CDS
T02216
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Organism
gor
Gordonia sp. KTR9
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrwC
AAA_30
AAA_19
UvrD_C_2
Viral_helicase1
SLFN-g3_helicase
DEAD
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFR51534
UniProt:
J9SRM3
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Position
pGKT3:complement(39237..45368)
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AA seq
2043 aa
AA seq
DB search
MDATDKGRVSLADYYSAKGDSPGQWIGSGLAGLSDVGAGLEVSEQLVDKRTVEAGSMVSA
VQMKALFGEGRHPNATAIEQHAVASSDCRTAEALAATKLGNAYAAYNEFPEFLQELAVVF
RDHNLARGERWDAVIDDDTRAALRTELGRERFTQTYRRPPRDSRELSGFIAQESRRRQSA
VAGYDMTFSPVKSVSALWAVAPLPMAEKIEAAHRQAVADALAFIEREACLSRLGTDGIAQ
VDTDGLIAAAFTHRDSRAGDPDLHTHVAISNKVRVRDAAGITRWMALDGTPLFKATVSAS
EVYNSRIELYLQRDLGVSFSERQQTDARKRPVREIDGVDTELMAQWSSRRAMIEHRLGEL
SQQFHTDHGREPTTGEAFDLAQQATLETREAKHEPRSYAEQRQAWRAQARRILGGDRAIS
DLVHEATHPRPRTREHPEFTDELCTDLAGACIETISATRARWQRPHLRAEAERQLRARDF
AGITDTDELAAAIERIVDTALAAETSVAVSSDALDGDLNEPEVLRRANGESVFVRHDVAL
HTSTDILAAEHRIVAAAKRSDGRRLDDTTVDIALLEQAANGRELNAGQAAMVRELATSGR
RVQLVLAPAGTGKTTALRTLARAWTDSGGTLIGLAPTAAAAAVLREELDTTTDTAAKLVQ
LAHASRDRALAATPHSRTEGNPELAAKVAAAQQKLSDPGYHAPKEPDWFTSIGPDTLVVV
DEAGMASTADLDEVIRCVAARGGSVRLVGDDQQLASISAGGVLRDVAHETGALTLSQVVR
FSDAAEGAASLALRDGDPAALGFYADHGRIHVESDAVAADDAYLAWLGDRAAGRDSVMLA
ATRDTVNALNERARADRLAGIDPRRRGPELRLSDGLAASVGDIISTRSNRRDLRLSATDW
VRNGDRWRVTHIGADGTLTAQHLDLNRHVQLPADYVAENTTLGYASTIHAAQGMTADTCH
VIGSDALDRQLLYVAMTRGRHGNHIYLPTTETDPHNATTPKARHPQTGLETLAAILGRDG
TQQSATTAQRDAVDPFLRLSRAAAAYDHALGSAAEHTLGAKALRNLEHDADTLYSTHTGT
PAGTLTACAAWPTLRTHLATLTLAGDDPITRLQAAIIHRELATAADPAAVLDWRLDPTQQ
HSAGGGPLPWLPQVPDGFDDPQWAPYLTRRGALVTDLAAAVTERAYAWDATTAPVWARPL
LLADPDRGGELVAELAVFRAARGVDDTDRRPAGPRPNSIALARRHAALTERADALVTTTA
EAARYADLARDLDPHLLADPYWPELADHLSLAARAGLDVDALARDALADNPLPTEMPAAA
LWWRLSRELAPAAAEATNTGLRPDWADALVGIVGDRAAEAILTDRAWPALVAAVSAADPT
QWNPHELLDLADTLLHSGTDDDHTVHLNEYARLLTWRVELLVTHSSHATDTTPLPPAPPT
PEDEAAAEAAAEAAGLADPWADTLTGQPGNDLDENVGVHEDYLAALTATEPPPETGVDVL
DPDDLDRYEDLDFDEFATDVVAAAPDRFAAPTDLAECIALRYELTAQLAELGTDMAQLRE
AINAGTSAHQQAMAPHVLALRAAADHQFAAAADTAGHHHDLMMAEQLIEDLTNQATALRR
TAAQLRAADTTDLDPLSDDEAPDLAALRAEADATALDWRVTAATADRDALAAVYNDANAR
LESAIAESGGVRVTDTDVELMRLQASELDELNLADLRARRADLTTRIYRIDNRLNHVHAL
THTAHHHRDTYLMPTTATAPVTTTDAVTPSATQPAAEATATAVAEPAADTELRDWLHQDP
LRAMSDDQLTAHLRTLTRRHTLAVDDLKTSRPAPEQTPRVRADHAELADTVDRIATARTA
GRALADAAARVTEARAALAGLPPAGRGRKARAEHDQHHQHLAEAVAAAERQHQYFAAAHE
QTRRDVGAPEYQWDDLTARAADTGTLASELAAAEHADNRARELRQKALDDRDTTAVAIEH
GRAERDRRQALPAARRDAEDAIRVALNPPDPEATPTAAPHSPVPHAPDLPPARDRGHDSG
VGD
NT seq
6132 nt
NT seq
+upstream
nt +downstream
nt
atggatgccaccgacaagggccgggtgtcgctggccgactactacagcgccaaaggcgat
tccccgggccagtggatcgggtctgggctggccggattgagcgatgtcggggccgggctg
gaagtgtcggagcagctggtcgacaagcgcaccgtcgaggccgggtcgatggtgtcggcg
gtgcagatgaaagccttgttcggcgagggtcgccaccccaacgccaccgcgatcgaacag
cacgctgtggcgtcctcggactgccgaacggccgaggcgttggcggcgacgaaactgggc
aacgcctacgccgcctacaacgaattcccggagttcctacaggaactcgcggtggtgttc
cgcgaccacaatctcgcccgcggcgagcggtgggatgcggtcatcgacgacgacacccgg
gcggcgttgcgcaccgagttgggccgcgagcgattcacgcaaacctaccgtcgcccgccg
cgggattcgcgcgaactgtcggggttcatcgcgcaggaaagccgccgccgtcagtcggcg
gtggccggttacgacatgacgttcagtccggtgaaatcggtgtcggcgttgtgggctgtc
gcgccgctgccgatggccgagaagatcgaggccgcccaccgtcaggcggtcgccgatgca
ctggcgttcatcgagcgcgaagcgtgcctgtcgcggttgggaaccgacggcatcgcccag
gtcgacaccgacggtctgatcgccgcggcgttcacccaccgcgactcccgcgccggggac
ccggacctacacacccacgtcgccatctccaacaaggtgcgggtgcgcgacgccgccggg
atcacccggtggatggccctggacggcaccccgttgttcaaggccaccgtgtccgcgtcg
gaggtgtacaactcgcgcatcgagctctacctccagcgcgatctcggggtgtcgttcagc
gaacgacaacagaccgatgcacggaaacgaccggtccgcgaaatcgacggagtcgacacc
gaactgatggcgcagtggtcgtcgcggcgcgcgatgatcgagcaccgtctcggtgagttg
tcgcagcagtttcacaccgatcacggccgcgaacccaccaccggtgaggcattcgatctg
gcccaacaggccaccctggaaacccgcgaagccaaacacgaaccccgctcctatgccgag
caacgccaggcgtggcgcgcccaagcgcgccgcatcctgggcggcgatcgcgcgatcagc
gacctcgtgcacgaggccacccatccacgcccccgcacccgtgagcatccggagttcacc
gacgagttgtgcaccgacctcgcgggtgcgtgcatcgagaccatctcggccacccgcgcc
cgctggcagcgtccgcatctgcgcgccgaagccgaacgccaactgcgtgcccgcgacttc
gccggcatcaccgacaccgacgaactcgccgccgccatcgagcgcatcgtcgacaccgca
ctggccgccgagaccagcgtcgcagtgtcctctgacgccctcgacggcgacctcaacgaa
cccgaggtgttgcgtcgcgcgaacggcgaatcggtgtttgtgcgccacgacgtcgcactg
cacaccagcaccgacatcctcgccgccgaacaccggatcgtggccgccgccaagcgctcc
gacggccgccgcctcgacgacacgaccgtcgacatcgcgttgctcgagcaagccgccaac
ggccgcgaactcaacgccggccaggccgccatggtccgcgagctggccacctccgggcgt
cgcgtgcaactggtgctggcgcccgccggtaccggtaaaaccaccgccctgcgcaccctc
gcccgggcgtggactgacagtggcggaaccctcatcggactggcccccaccgccgccgcc
gcggcggtgttgcgtgaggaactcgacaccaccaccgacaccgccgccaagctcgtccaa
ctcgcccacgccagccgtgaccgcgccctggccgcgacgccgcactcacgcacagagggc
aaccctgaactcgcggcgaaggtagcagcggcacaacagaaactgtccgaccccggctat
cacgcacccaaggagccggactggttcaccagtatcggacccgacaccctcgtcgtcgtc
gacgaggccggaatggcctcgaccgccgacctcgatgaggtgatccggtgcgtggccgcc
cgcggtggcagtgtgcggctggtcggcgacgaccagcagctcgcctccatctcggccggc
ggtgtgctgcgcgacgtcgcccacgaaaccggtgcgctcaccctgagccaggtggtccgt
ttctccgacgccgccgagggtgcggcgtcgctggcgctgcgcgacggcgaccctgccgcc
ctcggtttctacgccgaccacgggcgcatccacgtcgagtctgacgccgtggccgccgat
gacgcttacctggcttggttgggcgatcgcgccgccggacgtgactccgtcatgctcgcc
gccacccgcgacaccgtcaacgccctgaacgaacgggcccgcgccgaccgtctcgccggc
attgacccccgccgccgcggccccgagcttcgcctgtctgatgggttggccgccagcgtc
ggcgacatcatcagtacccgcagcaaccgccgggatctgcgcctgtcggccaccgactgg
gtccgcaacggcgaccggtggcgggtcacccacatcggcgctgacggcaccctgaccgcc
cagcacctcgacctcaaccggcacgtgcagctacccgctgactacgtcgccgagaacacc
accctcggctacgcctccaccatccacgccgcccagggcatgaccgccgacacctgccac
gtcatcggctccgacgccctggaccgccagctgctctacgtcgcgatgacccgcggccgc
cacggcaaccacatctatctgcccaccaccgaaaccgacccgcacaacgccaccaccccc
aaggcccgccacccccaaaccgggctggaaaccctggccgcgatcctcggccgcgacggc
acccaacagtcggcgaccactgcccaacgcgacgccgtcgacccgttcctacgtctgtcc
cgggccgcggccgcctacgaccacgccctcggttcggccgccgaacacaccctcggcgcc
aaggcactgcgcaacctcgaacacgatgccgacaccctctacagcacccacaccggcacc
cccgcgggcacgctcaccgcgtgcgcagcctggcccaccctgcgcacccacctcgccacg
ctgacgctggccggtgacgatccgatcacgcggctgcaagcagcgatcatccaccgcgaa
ctggccaccgccgccgacccggccgccgtgctcgactggcgcctggaccccacccagcaa
cactccgcaggcggcggacccctgccctggctgccgcaggtccccgacgggttcgacgac
ccccaatgggcgccctacctcacccgccgcggcgccctcgtcaccgacctcgccgccgcc
gtcaccgaacgcgcctacgcctgggacgccaccaccgcccccgtgtgggcgcgtccactg
ctcctcgctgaccccgaccgcggcggcgagctcgtcgccgaactcgccgtgttccgcgcc
gcccgcggcgtcgacgacaccgaccggcgtcccgcaggaccacgaccaaattccatcgcc
ttggcgcggcgtcacgccgcgctgaccgagcgcgccgacgccctggtcaccaccaccgcc
gaggccgcccgctacgccgacctcgcccgcgacctcgacccccacctgctcgccgacccg
tactggcccgaactcgccgaccacctgtcgctggccgcccgcgccggcctcgacgtcgat
gctctggcccgcgacgccctcgccgacaacccgctgcccaccgaaatgcccgccgccgca
ctgtggtggcgcctgtcccgtgagttggctcccgccgcggccgaagccaccaacaccggc
ctgcgccccgactgggccgacgctctcgtcgggatcgtcggggaccgggccgccgaagcg
atcctcaccgaccgcgcctggcccgcactcgtggccgcggtcagcgccgccgaccccacc
cagtggaacccccacgagctgctcgacctcgccgacaccctgctccacagcggcaccgac
gacgaccacaccgtccacctcaacgaatacgcccgcctgctcacctggcgagtcgaactg
ctcgtcacccacagcagccacgccaccgacaccaccccactaccgccggcaccgcccacc
ccggaagacgaagccgccgccgaagcagccgccgaagccgccggactggccgacccctgg
gccgacaccctcaccggccaacccggcaacgacctcgacgagaacgtcggcgttcacgag
gactacctcgccgcgctcaccgccaccgaaccgccgccggaaactggcgtcgacgtcctc
gatccggacgacctcgaccgctacgaggacctggacttcgacgagttcgccaccgacgtt
gttgctgctgcacccgatcgcttcgccgcgccgaccgacctcgccgaatgcatcgcgctg
cgctacgaactcaccgcccaactcgccgaactcggcaccgacatggcacagctgcgcgag
gcgatcaacgccggcaccagcgcccaccagcaggccatggccccgcatgtcctggcgttg
cgcgccgctgccgaccaccagttcgccgcggccgccgacaccgcagggcaccaccacgac
ctgatgatggccgaacaactcatcgaagacctcaccaaccaggcaaccgccctgcgccgc
accgccgcccagctccgcgccgccgacaccaccgacctcgaccccctcagcgacgacgaa
gcacccgacctcgccgcgctacgcgccgaggccgacgccaccgccctggactggcgcgtc
accgccgcgaccgccgaccgcgacgccctcgccgccgtctacaacgacgcgaacgcccgc
ctcgagtccgcgatcgccgaatccggcggcgtccgcgtcaccgacaccgacgtcgaactc
atgcgcctgcaagccagcgaactcgacgaactcaacctcgccgacctgcgcgcccgccgc
gccgacctcaccacccgcatctaccgaatcgacaaccgtctcaaccacgtccacgccctc
acccacaccgctcaccaccaccgcgacacctacctcatgcccaccacggccaccgcgccc
gtcaccactaccgacgctgttacgccgtcggcgacccagcccgccgccgaagccaccgcc
accgcggtcgccgaaccggcggccgacaccgagctgcgtgactggctccaccaggacccg
ctccgcgcaatgagcgacgaccagctcaccgcgcacctacgcaccctcacccgccgccac
accctcgccgtcgacgacctgaaaaccagcagaccagcgcccgaacagacccctcgggtg
cgtgccgaccacgccgaactcgccgacaccgtcgaccgcatcgccacagcccgcaccgcc
ggacgcgctctcgctgacgccgccgcccgcgtcacagaggcacgcgccgccctggcggga
ctgccgcctgccggccgcggccgcaaagcacgcgccgagcacgaccaacaccaccagcac
ctcgccgaggcggtcgccgcagccgagcgtcagcaccagtacttcgccgccgcccacgaa
cagacccgtcgggacgtcggcgcccccgaataccaatgggacgacctgaccgcccgcgcc
gccgacaccggcacactcgcaagcgaactcgcggccgccgaacacgccgacaaccgcgcc
cgcgaactccgacagaaagccctcgacgaccgcgacaccaccgcggtagcgatcgaacac
ggccgagccgaacgcgaccgccgccaggcgctacccgccgcccgacgcgacgccgaagac
gccatccgggttgccctcaacccgccagaccccgaagcaacccccacagcagcaccccac
tcgcccgtgccccacgctcccgacctacccccagccagggataggggccacgactctggt
gtgggcgactaa
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