Gordonia sp. SMJS1: QAD21_09550
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Entry
QAD21_09550 CDS
T10225
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gos Gordonia sp. SMJS1
Pathway
gos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QAD21_09550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gos03019
]
QAD21_09550
03009 Ribosome biogenesis [BR:
gos03009
]
QAD21_09550
Enzymes [BR:
gos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QAD21_09550
Messenger RNA biogenesis [BR:
gos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QAD21_09550
Ribosome biogenesis [BR:
gos03009
]
Prokaryotic type
rRNA helicases
QAD21_09550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
WGJ87316
LinkDB
All DBs
Position
2087645..2089417
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AA seq
590 aa
AA seq
DB search
MSTSNHGEHDAPADPQVGSFDDLEIDPRVRAAITDVGYETPSPIQAATIPPLMDGRDVVG
LAQTGTGKTAAFAIPILSRLDTSARTPQALILAPTRELALQVSEAFGKYSAHMPEVKVLP
IYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDRKTLDISGLEFLVLDEADEMLTMGFAE
DVERILAETPDTKQVALFSATMPSAIRRLAQKYLNSPQEITVKSKTATAQNITQRYLQVS
HQRKLDALTRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDLAQAQRERTI
NQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLF
VSPRERHLLRAIERATRQTLTEIGLPSVDDVNAQRVAKFADSITQNLSSDNLDLFRGLIE
NYARDNDVAMADIAAALALETRDGGFLMTPDPPQSEKRPERERAPRRPGASFATYRIAVG
RKHKVSPGAIVGAIANEGGLTRADFGNISIRDDFSLVELPDDLDNETLSSLRHTKIGKNP
IDIRKDMGAPRTRGGAKRGAGGHGGGRDGRRGDNWGKRPSPRVAGRGRHS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcgaatcacggcgagcacgacgcccccgccgacccgcaggtcggctcgttc
gacgacctcgagatcgacccgcgggtacgcgcggccatcaccgacgtcggctatgaaacc
ccgtcgcccatccaggcggcgaccatcccgccgctcatggacggacgcgatgtcgtcggc
ctcgcgcagaccggtaccggcaagaccgccgcgttcgccatcccgatcctgtcccgcctc
gacacctccgcgcgtaccccgcaggcgctgatcctcgcgccgacgcgagagctggcactg
caggtctccgaggccttcggcaagtattcggcgcacatgcccgaggtgaaggtgctgccg
atctacggcgggcagtcctacggcgtccaactcgcgggtctgcgtcgcggcgcgcaggtc
atcgtcggcacacccggtcgggtcatcgaccacctcgatcgcaagaccctcgacatctcc
ggtctggagttcctggtcctcgacgaagccgacgagatgctgacgatgggcttcgccgag
gacgtcgagcgcatcctcgccgagaccccggacaccaagcaggtcgcgctgttctcggcg
accatgcccagtgccatccggcgcctcgcgcagaagtacctgaactcgccgcaggagatc
acggtcaagtccaagaccgcgaccgcgcagaacatcacgcagcgctatctccaggtttcc
caccagcgcaagctggacgcgctgacacgcttcctcgaggtcgagaccttcgacgcgatg
atcgtgttcgtccgcaccaagcaggcgacggaagaactcgccgagaagctgcgctcgcgc
gggttctccgcggtcgccatcaacggcgacctcgcgcaggcgcagcgggaacggaccatc
aaccagctgaagaacggctcgatcgacatcctcgtcgcgaccgatgtcgcggcccgcggg
ctcgacgtcgaccgcatctcgcatgtcgtgaactacgacatcccgcacgacaccgagtcc
tacgtgcaccgcatcggccgtaccgggcgcgccggccgctcgggcaacgcgctgctgttc
gtctcgccgcgcgaacgccacctgctgcgtgcgatcgagcgcgccacgcggcagacgctg
accgagatcggcctgcccagcgtggacgatgtcaacgcacagcgggtcgcgaagttcgcc
gactcgatcacccagaacctgtcctcggacaacctggatctgttccgcgggctgatcgag
aactacgcgcgggacaacgacgtcgcgatggccgacatcgcggccgcgctggcgctcgag
acacgagacggcggtttcctgatgacgccggacccgccgcagtcggagaagcgccccgag
cgtgagcgtgctccgcggcgcccgggcgcgagcttcgcgacgtaccgcatcgccgtcggc
cgcaagcacaaggtgtcgcccggtgcgatcgtcggtgccatcgccaacgagggcggcctg
acccgtgccgacttcggcaacatcagcatccgcgacgacttcagcctcgtcgagcttccc
gatgatctcgacaacgagaccctctcgtcgctgcggcataccaagatcgggaagaacccg
atcgacatccgcaaggacatgggcgcaccgcgcacgcgcgggggcgccaagcgcggagcc
ggcgggcacggcggcgggcgggacggtcgtcgtggcgacaattggggtaagcgtccgtcc
ccgcgtgtcgcgggccgcggtcgccattcctga
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