Gordonia sp. SMJS1: QAD21_09915
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Entry
QAD21_09915 CDS
T10225
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gos Gordonia sp. SMJS1
Pathway
gos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QAD21_09915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gos03019
]
QAD21_09915
03009 Ribosome biogenesis [BR:
gos03009
]
QAD21_09915
Enzymes [BR:
gos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QAD21_09915
Messenger RNA biogenesis [BR:
gos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QAD21_09915
Ribosome biogenesis [BR:
gos03009
]
Prokaryotic type
rRNA processing factors
QAD21_09915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
WGJ87374
LinkDB
All DBs
Position
2177646..2181152
Genome browser
AA seq
1168 aa
AA seq
DB search
MTDNGSPADANAASESAEEFPSKLRVHALARFLGLTSRQVLAHLANLGVQTRSPQSSVDR
DLAKAVAERVRSGVDETGETPPQAAPAGDAALPDAAADTTPAEAPADTPPTDAAQAEAAS
VEAAPTEAVSAEAAPADDAPTAEVASTEDAAQTTADDSPAAPTAAPTLFSAAQYDAPVAT
PAAETDASTGAQPLFLQPQAPADKPRAARSGRAKTRAETGAKDESADTPADESVAAETST
STSADAPARSDRSRADDSTAADRDADVSTPHESGADDADDSNADDSNADDSGSGRSRRRR
RGRRGRGRGRGDQGGDSDSDTDESDAEASDADESTGDGATDADTDSEDTTSDESAEDSRS
EEGRPSGKRTRRRSRRSGADKAEDSEASGATGDRADESGDDADSADAEDASDDDDSGDSS
STRRRRRRRRRKGGGEPDEASPDDPPNTVVHEREPRSKRARDEVQGISGSTRLEAKRQRR
RDGRDAGRRRPPILTESEFLARREAVDRVMVVRERSANSRISGNDGHEHAAVEDYTQVAV
LEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEVNWDAA
GLDGGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRK
LPDVERKRLKQILAKLVPDEAGVIIRTASEGVSAEELGADIARLESQWKSIDEAVAQAKK
GGSSSPKPLYEEPDLLVRVVRDLFNEDFKKLVVEGDKAWNLVEGYVSSVASDLMERVEKF
DKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGN
LEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRH
QVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTACSGRGIIVHANPVEVKTDDSSRGDGAGS
KRSRRGKKKADAQPEAVAPAVAPAHKPAEHPMFRAMAAHAHDDEHDQESGATTDGDTTSR
AEDAPKPVVEASSPQQTADSRVDTAVAEPTETLPYPVATEPAEMDSAGTESAESEPAAVE
TEPEPAGSATDGQAPAAARRRRRVVRRPAQTTTPPDTVVMTAADVAAETPVTTSGPVSTG
NSEAAVAVRRRPRKRSAGRPAGPPPADD
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcgccggctgacgcgaacgcagcgtcggaatcggcggaagaattt
cccagcaaacttcgtgtgcacgccctggcccgcttcctgggcctcacgagtcgacaggtt
ctggctcacctggcgaatctcggcgtgcagacccgcagcccgcaatccagcgtcgatcgt
gacctggcgaaagccgtggccgaacgggtgcgctccggcgtcgacgagaccggcgagacg
ccgccgcaggccgccccggccggcgacgcggctctgcctgacgccgctgccgacacgacg
ccggccgaggcccctgccgacaccccgccgacggacgcggcacaggccgaggcggcatcg
gtcgaagccgcaccaaccgaggcggtgtccgccgaagcggcgcccgccgacgacgcaccg
acggccgaagtcgcatcgaccgaggatgctgcacagaccaccgccgacgactcgcccgcg
gcaccgaccgcagccccgacgttgttctcggccgcccagtacgacgcaccggtggcgacc
ccggccgcggagaccgacgcctcgaccggcgcgcagccgctgttcctgcagcctcaggcc
ccggccgacaagccccgcgccgcccgctcgggtcgtgcgaagacccgcgctgagacgggc
gcgaaggacgagtcggcggacaccccggcagacgagtccgtcgctgccgagacctcgacc
tcgacatcagcggacgcgcccgcccgctcggacaggtcgagagccgatgattcgactgcg
gccgaccgggacgccgacgtctcgacccctcacgaatccggcgccgacgacgccgatgat
tccaacgccgatgattccaacgccgatgattccgggtcgggccggagtcgccggcgtcga
cgcggacgtcgtggacgcgggcgcggtaggggagaccaggggggcgactctgattcggac
acggatgagtccgacgccgaggcgtccgatgccgacgagtcgaccggtgacggggcaacc
gatgccgacacggactcggaggacaccacgtccgacgagtcggccgaggactcgcgctcg
gaggagggccgtccgtcgggcaaacgcacccgccgccgcagccgtcgttcgggtgcggac
aaggcggaggactccgaggcgtccggcgccacgggcgaccgcgccgacgagtccggtgac
gatgccgactccgccgacgccgaagacgcatccgatgacgacgactccggtgactcctcg
tcgactcgccgccgccgtcgccgtcgccgtcgcaaaggtggcggcgaacccgatgaggcg
tctcccgacgatccgccgaacacggtggtgcacgagcgcgagccgcgcagcaagcgcgcc
cgcgacgaggtgcagggcatctcggggtcgacccgactcgaagccaagcgtcagcgccgg
cgcgacgggcgcgatgccggccggcgtcgtccgccgatcctgaccgagtcggagttcctg
gcacgccgtgaggcggtcgaccgcgtcatggtcgtccgagagcgcagcgcgaacagccgc
atctccggcaacgacgggcacgagcacgccgcggtcgaggactacacgcaggtcgcggtc
ctcgaggacggtgtcctcgtcgagcatttcgtgacgaccgcgacgtcgtcgtcgatggtc
ggcaacatctacctcggacgcgtccagaacgtccttccgggtatggaagccgcattcgtc
gacatcggtcgcggacgcaacggcgtgctctacgccggtgaggtcaactgggacgctgcc
ggactcgacggcggttcgcgcaagatcgagcaggcgctcaagcccggcgacaacgtgctc
gtccaggtcagcaaggacccggtgggtcacaagggcgcccgtctgaccacgcagatctcc
ctcgccggccgctacctggtgtacgtgcccggcggttcgtcgaccgggatcagccgcaag
ctgcccgacgtcgagcgcaaacgtctcaagcagatcctggcgaagctcgtccccgacgag
gccggggtcatcatccgcaccgcgtcggagggagtcagcgccgaggaactcggtgccgac
atcgcccgcctcgagtcgcagtggaagtccatcgacgaggcggtggcccaggccaagaag
ggcgggtcgtcgagcccgaagccgctgtacgaggagcccgacctcctggtgcgcgtcgtc
cgtgacctgttcaacgaggacttcaagaagctcgtcgtcgaaggtgacaaggcctggaac
ctggtcgagggttacgtcagctcggtggcctcggatctcatggagcgggtcgagaaattc
gacaagccgcacgccgacgcgccggattcgttcgtcgtgcaccgcatcgacgagcagctc
gcgaaggcgctcgaccgcaaggtgtggctgccctccggcggcacgctgatcatcgagcac
accgaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccggctcggggggcaac
ctcgaggagacggtgacgcgcaacaacctcgaagccgccgaggagatcgtgcggcagatg
cggttgcgcgacatcggcgggatgatcatcgtcgacttcatcgacatggtcctcgagtcg
aaccgggatctggtgctccgcaggctcaccgaggcgctcgctcgtgatcgcacccgtcac
caggtgtccgaggtgacctcgctgggcctcgtccagatgacacgtaaacgtctgggaacc
ggtctgctggaagcgttctcgaccacctgcaccgcctgcagcggtcgaggcatcatcgtg
cacgcgaatcccgtcgaggtgaagaccgacgactcttcgcgtggcgacggtgccggttcg
aagcggtcccgtcgaggcaagaagaaggccgacgcgcaaccggaggcagtcgccccggcc
gtcgcgcccgctcacaagccggccgaacacccgatgttccgggcgatggcggcgcacgcg
cacgacgacgaacacgaccaggagtccggcgcgaccaccgacggtgacaccacgagtcgg
gccgaggacgcgccgaagcccgtcgtcgaggcgtcgtcgccgcagcagacggccgacagc
cgggtggacaccgctgttgccgagccgaccgagaccctgccgtatccggtggcgacggaa
ccggctgagatggattcggctgggacggaatcggctgagtccgaacctgcggcggtcgag
acggagccagagccggccggctcggccaccgacggacaggctccggcggccgcacggcgt
cgtcgacgggtcgtccggcgtccggcgcagacgaccacaccgccggacaccgtggtgatg
accgcggcggatgtcgctgcggagacgccggtgacgacctcgggtccggtctccaccggg
aactcggaggcggcggtcgcggtacggcgccggccgcgcaagcgcagcgcgggccgtccc
gcgggaccgccaccggccgacgactga
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