Gordonia sp. SMJS1: QAD21_12280
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Entry
QAD21_12280 CDS
T10225
Name
(GenBank) TerD family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
gos Gordonia sp. SMJS1
Pathway
gos03030
DNA replication
gos03430
Mismatch repair
gos03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QAD21_12280
03430 Mismatch repair
QAD21_12280
03440 Homologous recombination
QAD21_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gos03032
]
QAD21_12280
03400 DNA repair and recombination proteins [BR:
gos03400
]
QAD21_12280
Enzymes [BR:
gos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QAD21_12280
DNA replication proteins [BR:
gos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QAD21_12280
DNA repair and recombination proteins [BR:
gos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QAD21_12280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TerD
RNase_T
BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WGJ87860
LinkDB
All DBs
Position
2698041..2699825
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AA seq
594 aa
AA seq
DB search
MSSVGRGWTLVDVETSGLSSRQHRVLSLAAIALDANGHVVGEYSSLFNPGCDPGPVHIHR
LTRERLNGSPTFDSAVEHLRELLEGRTLVAHNPVFDHGFLVEEARRAGVTLPITHRLCTI
TLTRRLQLDVPNAKLSTLAQHWSVPQRAAHDAGDDVRTLLEVFRRSTGLASTLGLPLPVV
ACGAATRAYPDKVTRVPCPWTDPGRYDSAVGLIQGTKVVITGPTHAPRLELARRLADAGL
DVMNAVSGKTGLLVANPGAPDSRKLQRAQKLGIPLVDEATALSLSERVVPGTLKSVSVIE
VIPSPPRTRGTPPRRASSSLPWSGRRVLVLGGHHSDATAVRARLVQLGAVPAINLTAAVT
HVLVMTGGEADGRFSKARDRGLPVLEAHHVSSVAVTSDPAIAEPQGVDDGCPEASSAPTS
LSAGAVVDIPQGFDGFTVNVAWTSTHGNSSRGPEVDVVAFELAGDGRVPSDDEFVFYNQP
ASPDGVARLSIDGDREQGLSIDLAAASDEIEKITIGAAIDGDATFGDVGAISVTVDAAEF
TFATAVLDAATTERSMIIAEIYRRHGLWRLRAVGQGYDDGLAEFAVRHGVEVEE
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatctgtagggcgaggttggacgcttgtcgacgtcgagacgtccggattgagttcg
cgtcagcaccgtgtactcagtttggccgcgatcgcgttggacgcaaacggacacgttgtc
ggcgagtactcgtcgttgttcaaccccgggtgcgatccgggtcccgttcacatccatcgc
cttacgcgcgagcgtctcaacggttcgccgacctttgactctgcagtggagcacctacgt
gaactgctcgaaggtcggacgctggttgcccacaacccggtcttcgaccacggcttcctc
gtcgaggaggcgcgacgagcaggggttactctcccgatcactcatcgtttgtgcaccatc
accttgacgcggcggctccaattggacgtccccaacgccaaactctcgacacttgctcaa
cactggtcggtcccacaacgagccgcccacgacgccggcgatgacgtgcgaaccttgctg
gaggtgtttcgacggagtaccggtcttgcaagcactttgggattgccactgcccgtcgtc
gcgtgcggtgctgcgactcgcgcgtatccagacaaggtcaccagagtgccttgcccgtgg
acagaccccggccgttatgactcggctgtgggactgatccagggcaccaaagtcgtgatc
acaggaccgacgcatgcgcctcgcctcgagctggctcgtcgtctggccgatgcaggattg
gacgtgatgaacgcggtgagcggcaagacggggttgctagtcgccaatcccggggcaccg
gacagccgcaagttgcagcgcgcccaaaaactgggaatcccattggttgatgaagcgact
gcgctctcgttgtccgagcgcgtcgtgcccggcacactgaaatcggtttcggtgatagag
gtcattccttcgccgccccggactcgcgggacacccccgcgacgggcgtcgagttcactg
ccatggtccggtcgacgggttctcgtgctgggaggacaccacagcgacgcgacggcggtg
cgggcacgccttgtccagcttggtgctgtgcccgccatcaacttgacggctgcagtcacg
cacgttcttgttatgactgggggagaagccgacggtcgcttctcgaaagcgcgggatcgg
ggtctcccggtccttgaggcccatcatgtctcgagtgtcgctgttaccagcgacccagca
atagctgaaccgcagggcgtcgatgacggctgcccggaagcgagttccgcgccgacttcg
ttgtccgctggcgccgtcgtcgacattccgcaggggttcgatggattcacagtcaacgtc
gcgtggacgtctacgcacggcaactcgtcccgcggccccgaagtcgacgtcgtcgcattc
gagttggcgggtgacgggagagtcccgtcagacgatgagttcgtcttctacaaccaaccg
gccagtccagatggtgtcgcacgactgtcgatcgacggtgaccgcgagcaaggcctgagc
atcgacctcgccgcggcttcagacgagatcgagaagatcacgatcggagccgcaatcgac
ggtgacgcaaccttcggggatgtcggcgctatttctgtaacggttgacgcggccgaattc
accttcgcaacagcagttttagacgccgcgacgactgaacggtcaatgatcatcgcggag
atctatcgacgtcacggcctctggcgccttcgcgcagtcggccagggctacgacgacggc
ctcgccgagttcgcagttcggcatggggtggaggttgaggagtga
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