Gordonia sp. SMJS1: QAD21_12315
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Entry
QAD21_12315 CDS
T10225
Name
(GenBank) RHS repeat-associated core domain-containing protein
Organism
gos Gordonia sp. SMJS1
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Ortholog
Paralog
GFIT
Motif
Pfam:
RHS_repeat
T7SS_signal
TEN_YD-shell
DUF6531
DUF6229
Motif
Other DBs
NCBI-ProteinID:
WGJ83653
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All DBs
Position
2704829..2711320
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AA seq
2163 aa
AA seq
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MGLFDALEGGKEVVGGLIDGATELLGGGLRAVGLDSIATNVEDFGDDVANSLGAMPDEKN
LDETKDPRELILGDPSGITSLAEKFTGFAGNFVTAGEGLRAISVDDWSGDGGQEFADAIG
RQVPPWFAAGDAAAKAAAALTGWAGVVTFAQQKAAEAVRIWEEGERKRDEWVTKANIYND
ELDDYKNDRRDTPPTHPGPDPWPGYKAEAERVLKVGRDHRNSSAPGVKAELSGAANMAPP
MPSAFDQARMTATDVGTAAVTGFNHFEAGLIGSVTEVVRGLNTMLPQNPYNVANPHNYMR
NSATMVTGIVHQVAHPDEFVRNFAGSGWSTDPSQALGNVIGNTAMMIAPGPKGGGMLTGF
MKAGRNIPSTPPTPHINPTPRHPGAPPASLHPTPAPHGSSPDTPGASPSADLPGRQGPDL
AVDHNAPPVPRADGPAPDAPAHEPPAPADQPNPAPTPDAGTPSPGTVDTPSSGGAPEPPA
PRPDAGSPDQPVASGPVGSPGPHTPGPGTPAPTPNPEPTPSPVSDGPGSPTPGPADNPSG
PRNLGDDDPPGPNRGDTTTPAAAPGGDRSPGQSTPGLNAVDRDGAPNPTHHEPSAPKPDE
PVVDRTPTRHDEPIGGHPPKADEPASPTTPHTRPDSDAPGPRPTPASIHPDAPTTRPDVV
DTPTRAPDHTDTPATGPLAPVAGHPPVSTPHATPDPVQSKPAPTSAGPVAPARADAPATP
PRAPDHTPDRTPPARTTPESTTPRDLDRGRPVPSNTHHVPEPTVRNTPDTTPNPPRTGPD
DRPIPPTVVPDRPFTPERPSPASPRPASPDAPSSPRDPAPGNRPDGDNPDVDNSAPDNDT
GEPIDPAHPERTDAGSTDRADTSEGNEAPEQCRSNGEPVNVATGEYFLPLTDVDLPGVLP
LRLTHRHRSRYRWGRWLGPTTPSTFDARAIVGDDLVTIVDADGTMTNFPKPQDDSVSRSV
NDTDWELRATATDGYQLTHVRTLVSWFFIPIPELDGVDVTAGSIAASAMTDRHHNRIRFV
FDEHGRPSAVEHSAGYRIEVQCDSARILGYRLVAGVNGVPANQQLCTFTYHRGHLAASTN
AVGATTRFGYDDAGRMTWWRDSIGMEYWNRYDDLGRVTIQSGMNGVWSGRFDYQLRTAGP
GSITTYTDAVGATTLYGIDADNRVRQEIDALGRITRTDYNDSRQPMVLTGADGLSTRLHY
NAFGDVERIVGPDGAATEVSYAGLGRPDRIVEPGPVTTRIAYTDNGSPLTVTDNAGAVTS
YTYDEHGALTSLTDPDGVMVRYRNNAAGLPTEIVDMLGNTTRIRFDAFGRPVEVVDAEGA
RITVGYDAMGNRTSLVAPDGGQSRWEYDGEGNCAAYVDPVGATTRWEYGHYDLPVARIDA
DGSRTAFTYDTARRLVAVTNPDGLVWSYSYNADGSLQSEVDFNNATTTYAYDAGGRLATR
TNAAGQTVAFEYDAAGRVVAERSSDPLNPVFDGEVTEYSYDLAGRPESVVGAFGRWHSTY
TAAGMPLLTGVNDGTGDWVIESGWTGAGRSASVTTPTAVHTRYGYDPRGVLDFISTAGRT
CDITTDASGREQRRRFEGTAIDSSWDPVGRLVGRSVAAVSANPATLNLGSSGPSGGVPER
TVARAEYTYRADGILTASTTTLANRGRTDYQVDVLGRITAAVGVSNSEQLTYDATGNITE
YGISDSRPGTTPTEVQDVGQSPPPGMRGVSQPPLPDARGGSQPPFPEVRVASQPPFPEVR
GASRASKGPRWRYSGTLLVDDGRTSYRYDPAGRLTTMSRRRLSRKPDVWHYVWDAHDRLR
SVATPDGTTWTYTYDHLGRRLSKTNTATGAVTRFHWHGEQLVEQTESVPDASDAGTNAGL
TATTWTFAPYAYTPLAQTRSTETIMASDSPEERNSAPDADVSLNLGSPGVAPSRPVKWTQ
TEVDREFFAIVTDQIATPTALVDPHTGEVAGHSARTLYGESTWVGSSTPWAFPGQYADSE
SGLYYNRYRYYQPGTGRYLNPDPLGLTPAPNPHTYPANPTATIDPLGLTPCSGDETVKRY
GPHVDGPLEKWLAETFRGGSYTERVSTSPMTLYRTYTEGGRPLGQFWTRTEPSGPLQARI
DSALNPEWMNQATAVTRIEVPAGTKYFEGAVAPQEIYAGGVLLGGGNQIVFTPGMMIPNS
WIR
NT seq
6492 nt
NT seq
+upstream
nt +downstream
nt
gtggggctgttcgacgccctcgaaggcggcaaggaggtcgtcggcggactcatcgacggc
gccacggagctcctcggcggcggtttgcgcgccgtcggccttgacagcatcgccacaaac
gtcgaagacttcggtgacgacgtcgccaactcgctgggcgccatgcccgacgagaagaat
ctcgacgagaccaaagaccccagggagttgatccttggtgatccgtccggaatcacctct
ctcgctgagaagttcacgggtttcgccgggaacttcgtcaccgccggcgagggcttgcgc
gccatttcggtggacgactggtcgggcgacggcggacaagagtttgccgatgcgatcggc
cgccaggttccaccatggttcgccgccggcgacgccgcggctaaagccgctgccgcactc
acaggttgggccggcgtcgttacctttgcgcagcagaaagccgccgaggccgtgcgcatc
tgggaagagggcgagcgcaaacgggacgaatgggtcaccaaggccaacatctacaacgac
gaactcgacgactacaagaacgatcgacgcgacaccccgcccacccatcccggacccgat
ccctggcccggatacaaggccgaggcggagcgagtcctcaaagtcggccgcgaccaccgc
aactcgtcggccccgggcgtcaaggccgaactgagcggcgccgcgaacatggcaccgccg
atgccgtccgcgttcgatcaggcgcgcatgaccgctaccgatgtcgggaccgccgccgtc
accggcttcaaccacttcgaggcaggtctcatcgggtcggtcaccgaggtggtgaggggg
ctgaacacgatgctcccgcagaacccgtacaacgttgccaatccccacaactacatgcgc
aactcggcgaccatggtcaccgggatcgtgcaccaggtcgcccatcccgacgagttcgtc
cggaacttcgccggatccggatggtcgaccgatccgtcccaggcactcggcaacgtcatc
ggcaacacggccatgatgattgccccgggtccaaagggcggcggtatgttgaccggcttc
atgaaggctggtcgcaacatcccgtcgacgccaccaactccacacatcaacccgacacca
cgtcacccaggcgccccgcccgcgtcactacacccgacgcccgcgccacacggatcgtcg
ccagacacgcctggcgccagccccagtgccgacctgcctggacgacaaggtcccgacctc
gctgtcgaccacaacgcgcctccggtccccagagctgacggtcccgcgccggacgctccg
gcccacgaaccacctgcgcccgccgaccaaccgaatccggctcccacgcccgacgccggc
acaccttcgcccggcaccgtcgacactccgtccagcgggggtgcacctgaaccgcccgcg
ccacgccccgacgccgggtcgccggaccagcccgtcgctagcggacctgtcggcagcccc
ggcccgcacacacccggtcccgggacccccgcgcccactccgaatcccgagcccactccc
tcgcccgtttccgacgggccgggatcgccgacgccgggacccgcggacaatccctctgga
ccacgaaacctgggtgacgacgacccgcccgggccgaaccgcggcgacaccacaactccc
gcagccgcacccggtggcgaccggtcacccggccagtccactcccggactcaacgccgtc
gaccgcgatggcgcaccgaacccgacacaccatgaaccgtcggcgcccaagcccgacgag
cctgtcgtcgaccggaccccgacccggcacgacgagccgatcggcgggcacccacccaaa
gccgacgaaccagcaagtcccacaacacctcacacgcgccccgactcagacgcgcctggt
ccacgccccacgccggcctcgatccatcccgacgcgccgacaacacgacccgacgtcgtc
gacaccccgacgcgcgcgcctgaccacaccgacacgcccgcaaccggacccttagcaccg
gtcgccgggcaccctccggtgtcgacgccacatgccacacccgatcccgtgcaatcgaaa
cccgctccgacgtcggctggtcccgtcgccccggcgcgtgcggatgctcctgcgacgcct
ccgcgcgcacccgatcacaccccggaccgcacgccgcctgcgcgcaccacaccggagtcg
actacaccgcgcgacctggaccgcggccgtccggttccgtcgaacacccatcacgtgccc
gaacccaccgtgcggaacacgccggacacaacacctaacccgccgcgcactggacccgac
gaccgtccgatcccgccgacggtggttcccgaccgcccgttcacaccggaacgcccgtcg
ccggccagcccacgtccggcgagtcccgatgcaccgtcatcgccgcgcgaccccgcccca
ggtaatcgacctgacggcgacaacccagacgtcgataactccgccccggacaacgacacc
ggcgaaccgatcgaccccgcccaccccgaacgcaccgacgcgggctcgacggatcgcgcc
gacaccagcgagggcaatgaggcgcctgagcagtgtcggagcaacggcgagccggtcaac
gtcgcaacaggcgagtacttccttccgctgaccgatgtcgacctcccgggcgtcctaccg
ctgcggctcacccaccgacatcgctcgcgataccgctggggacggtggctcgggccgacc
acgccgtcgacgttcgacgcccgcgccatcgtcggcgacgacctggtgaccatcgtcgac
gccgacggcacgatgacgaatttcccgaagccgcaagatgactccgtgtcgcgaagcgtg
aacgacaccgactgggaactgcgagcaacagcgacggacgggtaccagctgacccatgtc
cgcacgctcgtcagctggttcttcatcccgatcccagaactggacggcgtcgacgtcacg
gccgggagcatcgcagcctccgcgatgaccgaccgtcatcacaaccgcatccgcttcgtg
ttcgacgagcacggaagaccctctgcggtagagcattccgccggttaccgcatagaggtg
cagtgcgacagcgctcggatcctcggctaccgcttggttgccggggtgaacggcgttccg
gccaaccagcaactgtgcacattcacctatcaccgcggccatctagccgcgtcgaccaac
gccgtcggtgcgacaacgcgtttcggctacgacgacgccgggcggatgacctggtggcgc
gactcgatcgggatggagtactggaaccggtacgacgacctcggccgtgtgaccattcaa
tccggcatgaacggagtgtggtccgggcggttcgactaccagctccggacggcgggcccc
gggtcgataacgacctacaccgacgccgtcggcgcgacgacgctgtacggcatcgatgca
gacaatcgggtgcggcaggaaatcgacgcgctgggtcggatcacccggaccgactacaac
gacagtcggcaaccgatggtgctcaccggtgcagatggactctcgacacggctgcactac
aacgctttcggtgatgtcgagcgaatcgtcggacccgacggtgcagcgacggaagtgagt
tacgcgggtctaggacggccggaccgaatcgtcgaaccgggtccggtcaccacgcgaatc
gcttacaccgacaatggaagtccgctgacggtgaccgacaacgccggcgcggtcacgtcg
tacacctacgacgaacacggcgcactgacgtcgctcacggaccccgacggcgtgatggtt
cgctaccgcaacaacgcggccggactccccaccgagatcgtcgacatgctcggcaacacg
acgcggatcagatttgatgcgttcgggcggccggtcgaggtcgtcgacgccgagggcgcc
agaatcaccgtcgggtacgacgcgatggggaatcggaccagtctcgtcgctcccgatggt
ggacagtcgcggtgggagtacgacggcgagggcaattgcgccgcctacgtcgatcccgtc
ggcgcgaccacgcgttgggagtacggccactacgacctgccggtcgcgcggatcgacgcg
gacgggtcgcgaaccgcgttcacctacgacaccgcccgccgactcgtcgcggtcaccaac
ccggacggtctggtgtggagttactcgtacaacgcggacgggtcgttgcagtccgaggtc
gacttcaacaacgcgacaacgacctacgcgtacgacgcgggcggacggctcgctacgcgg
acgaacgcggccgggcagactgtagcgttcgagtacgacgcggccggtcgtgttgtcgcc
gaacgtagttccgacccgctcaaccccgtcttcgacggggaggtcaccgagtacagctac
gacctcgccgggcggccggagagtgtcgtcggcgcgttcggacggtggcactcgacgtat
acggcggcgggcatgcctttactgaccggcgtgaacgacggaaccggcgactgggtgatc
gagtctggttggacgggcgcgggccgttcggcatcggtgacgacgccgaccgcagtgcac
acgcgctacgggtatgacccgcgcggggtgctcgacttcatttcgacggcgggtcgtacc
tgtgacatcaccaccgacgcgtccggtcgcgagcagcgtcgacgcttcgaaggcacggcc
atcgattcgtcgtgggatccggtcggtcggctggtgggacggtcggttgcggcggtctcg
gcgaacccggcgacgctgaacctcggttcgagcgggccgtccggcggggtaccggaacgc
accgtcgcacgagccgagtacacctaccgcgccgacggcatcctcaccgcttcgacgacg
acgctcgccaatcgcggccggaccgactaccaggtcgatgtacttggacggatcactgcg
gcggtcggtgtgtccaactcggagcaactgacctacgacgcgaccggcaacatcaccgaa
tacgggatcagcgactcgcgtcccgggaccacgccgaccgaggtgcaagacgttggccag
tcgccgccacccggcatgcgaggcgtcagccagcccccactgcctgatgcgcgaggcggt
agccagcccccgttccctgaggtgcgagtcgctagccagcccccgttccctgaggtgcga
ggcgctagccgagcctcgaagggtccccgctggcgatactccggcaccctgctcgttgac
gacggccggacgtcgtaccggtacgaccccgcgggccgcctcaccacgatgagtcgcagg
cgattgtcgcgcaaacccgatgtgtggcattacgtctgggacgctcacgatcggctacgc
agcgtggccactcccgacgggacgacctggacgtacacgtacgaccacctcgggcgacgc
ctcagcaagaccaacacggcaaccggggcagtcactcggttccactggcacggcgagcag
ctggttgaacagacagagtcagtgccggatgcatcggacgccggaaccaacgcgggcctc
acggcgactacctggacgttcgcgccctacgcgtacacacctctggcgcagacgcgcagt
acagaaacgataatggcgtcggacagtcctgaagaaaggaatagcgcacccgacgcggac
gtgagcctcaacctcggctcacctggggtcgcgccgtcgaggcccgtcaagtggacccag
accgaagtcgatcgagagttcttcgcgatcgtcactgatcagatcgcgacaccgacagcg
ctcgtcgacccgcacactggcgaagtcgccgggcactcagcgagaactctctacggcgag
agcacgtgggtgggctcgtcgacgccgtgggcgtttcccggtcagtacgcggactccgag
agcgggctgtactacaaccgttaccggtactaccagcctgggaccggacggtatctgaac
ccggacccgctgggactaacgcctgctcccaatccgcatacctatcccgccaacccgacc
gcgactatcgacccactcggcctcaccccgtgctctggcgatgagacggtcaagagatac
ggtcctcacgtagatgggcccctggaaaagtggttggccgaaacattccgaggtggcagc
tatacagaaagagtgtcgacgagtccgatgacgttatataggacgtacacagaaggcgga
cgtcctcttggtcagttctggactcggactgaaccgagcggccctttgcaggctcgtatc
gatagcgcactgaacccggagtggatgaatcaagccacagctgtgaccaggattgaagtt
ccggctggcacgaagtacttcgagggagctgtcgcgcctcaggaaatctatgcaggaggc
gtgcttctcggcggtggaaatcagatagtcttcacgccgggcatgatgattcccaattct
tggattcgttag
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