Gordonia sp. SMJS1: QAD21_18620
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Entry
QAD21_18620 CDS
T10225
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
gos Gordonia sp. SMJS1
Pathway
gos03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QAD21_18620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gos03400
]
QAD21_18620
Enzymes [BR:
gos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
QAD21_18620
DNA repair and recombination proteins [BR:
gos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
QAD21_18620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
WGJ87936
LinkDB
All DBs
Position
complement(4103353..4104228)
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AA seq
291 aa
AA seq
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MRVATWNVNSVKQRIPRLLPWLDERRPDVVCLQETKLSDAAFDESLGADLADRGYEVAHA
GQGQWNGVALLSRVGLDDVRIGFDGMPGYPDPSTLEARAVSAVCGGLRIHSLYVPNGRTP
DSDHYTYKLEWLAALARAVEDPTTTLLCGDMNIAPADADLFDPAAYVGHTHVTPAERAAL
ATFESMGLRDVVRDRWPGERVFSYWDYRAGMFHKDLGMRIDLILAGASAADRVAAAWIDR
KARKGSKPSDHAPVIVDLDEAPDGDIGPVVPPPSNPAKPGATKVKLPQTPE
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtggcgacctggaacgtgaactccgtgaagcagcgcatcccgcgcctgttgccc
tggctcgacgagcgccgacccgacgtggtgtgcctgcaggagaccaaactctccgacgcg
gcgttcgacgagtcactcggcgccgatctcgccgaccgcggatacgaggtcgcgcacgcc
ggacaggggcagtggaacggggtggcgctgttgtcgcgggtcggactcgacgacgtccgg
atcggattcgacggcatgcccggataccccgacccgtcgactctcgaggcacgggcggtg
tcggcggtgtgcggcggactccgcatccactcactgtatgtgcccaacggccggaccccg
gactcggaccactacacctacaaactcgagtggctcgcggcgctggcccgtgccgtggag
gacccgaccacgacactcctgtgcggcgacatgaacatcgcgccggccgacgccgacctg
ttcgaccccgccgcgtatgtgggacacacccacgtcaccccggcggaacgggccgcgctg
gccaccttcgaatcgatgggcctgcgcgacgtcgtccgggaccggtggccgggcgagcgt
gtgttcagctactgggactaccgcgccggcatgttccacaaagacctcgggatgcgcatc
gacctgatcctcgccggagcgtccgctgccgatcgcgtcgcggccgcctggatcgaccgg
aaagcacgcaagggcagcaagccgagtgaccacgcgccggtcatcgtcgacctggacgag
gctcccgatggcgacatcggaccggtggtcccgccgccgtcgaatccggcgaagcccggt
gcgacgaaggtgaaactgccgcagacgccggaatga
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