Gemella sp. oral taxon 928: AXE85_03245
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Entry
AXE85_03245 CDS
T04256
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
got
Gemella sp. oral taxon 928
Pathway
got03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
got00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXE85_03245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
got03019
]
AXE85_03245
Messenger RNA biogenesis [BR:
got03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXE85_03245
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AME09234
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Position
723952..725739
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AA seq
595 aa
AA seq
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MNNEKNNNHGQKISVHKKNNVVKNKLNNIESKEVKKKPSKSRKNYPKVSITPLGGVEEVA
KNMYMVEIGDEIFVLDAGLMFPETEMIGIDAVIPDISYLIKNKNRVKGIFLSNGRVSSMG
AVPYIIDKLKCPVYGSKLTIDLLKNHLKQLNIRRRIKFYYVRENNKYDFNNAHITFFKTT
YSMPDSLGICISTAQGNIVYTGEFKFDQSVSKEYRADMLKISQLGQKGVMVLLSDSSNAN
VKGYNVPENEAAEQIDNAFYQANKRIIVTCYASNFLTISHIVKAALGQNRKILLLGQAIQ
DSINSARNMNYLEIEDDKLIGIDDLKNYPQNEICILSSGEQGEPIEAMKNIAEKSITNIQ
IEEGDTIMIAATPSPNMEVMLFQTLNLLVELGANVVTASKRLHAASHATREELKLILNML
MPKHFIPVQGEFRNLRKHAEIAAETGVNKKNIHILEKGTTLEISGNKAKELLKNIPVGNI
LVDGRGIGDVEDSVLKDRKLLSNDGIFVTSYAISRKTKSLVGRPCIQTKGFVYVKKSAEL
IKEAEEKVTEYLINNPIKSIRDCSTIKSEIRSMLSSLLYDSTKRKPIIIVNFTLI
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgaaaaaaataataatcatggtcagaagatcagcgtacataaaaaaaataat
gttgtgaaaaataaattaaataacattgagagtaaagaagtaaagaaaaaaccaagtaaa
tcaagaaaaaattatccaaaggttagtataactccgttagggggagtagaagaagtagct
aaaaacatgtatatggtagaaattggtgacgagatatttgttttagatgccggtcttatg
ttccctgaaactgaaatgatagggatagatgcggttataccggatattagttacttgatt
aagaataagaatagggtaaaaggtatctttttatctaatggacgtgtaagttctatgggg
gctgttccttatataatagataagctgaagtgtcctgtttatggttctaaattaacgatt
gatttattaaaaaatcatttaaaacaattaaatatcagacgtcgtattaaattttattat
gttagagagaataataaatatgattttaataatgctcatataacattttttaaaacgaca
tattctatgccggattcactaggtatttgcatttctaccgcacaaggaaatatagtttat
accggagaatttaagtttgaccaatctgtaagtaaagaatacagagcagatatgttaaaa
attagccaactaggtcaaaaaggtgttatggtattactaagtgattccagtaatgctaat
gtaaagggatataatgtgccggaaaatgaggcggcagaacagattgataacgcattttat
caagctaataaaagaattattgttacgtgttatgcctctaattttttaacaatttctcat
attgttaaagccgcattaggtcaaaatagaaaaatattattactgggtcaagctattcaa
gattctataaatagtgcaagaaatatgaattacctagaaatagaagacgataaattaatt
ggtatagacgatttaaaaaactatccacaaaatgaaatatgtattctttcatccggagaa
caaggagaacccattgaagcgatgaaaaatattgcagagaaatctattaccaatattcaa
atagaagaaggagatactattatgatagcggcaactccatcacctaacatggaagttatg
ttattccaaacattaaatcttcttgtagaattaggtgctaatgttgttaccgcctctaaa
cgtcttcatgctgcaagtcacgctacacgtgaagaattaaaattgattttgaatatgtta
atgcctaaacactttattcctgttcaaggagaatttaggaatttaagaaaacatgcagaa
atagcagcggaaacaggtgttaacaaaaaaaatattcacatattggaaaaaggtactacg
ttggaaatttcaggtaataaggcaaaagaattattaaaaaatattccggttggaaatatt
cttgtagatggtcgtggaattggagatgtagaagacagtgttttaaaagatagaaagttg
ttgtcaaatgacggtatttttgtaacctcgtatgcaataagcagaaaaactaaaagttta
gtcggaagaccatgtattcaaacaaagggttttgtctatgttaaaaaaagtgctgaactc
ataaaagaagctgaagaaaaagtcacagaatacttaattaataatcctataaagagtatt
cgtgattgttcaacaataaaatcagaaattagaagtatgttatccagtctactttatgat
agtacaaaacgaaaacctataattatagtcaactttacattaatttaa
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