Gemella sp. oral taxon 928: AXE85_05210
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Entry
AXE85_05210 CDS
T04256
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
got
Gemella sp. oral taxon 928
Pathway
got03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
got00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXE85_05210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
got03021
]
AXE85_05210
03400 DNA repair and recombination proteins [BR:
got03400
]
AXE85_05210
Enzymes [BR:
got01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXE85_05210
Transcription machinery [BR:
got03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXE85_05210
DNA repair and recombination proteins [BR:
got03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXE85_05210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RE_TdeIII
Motif
Other DBs
NCBI-ProteinID:
AME09589
LinkDB
All DBs
Position
complement(1159875..1163555)
Genome browser
AA seq
1226 aa
AA seq
DB search
MIDVNNFAYMKISLASPEKIRSWSYGEVKKPETINYRTLKPENDGLFCERIFGPTKDWEC
ACGKYKRVRYKNIKCDKCGVDVTLSKVRRERMGHLDLAAPVSHIWYFKGIPSRMGLLLDL
SPRQLEEVIYFASYIVIDPGETDFMKKQIVSEREVREARSTFGANSFVAKMGAEAIRDLL
AELDIEKELRDLKNELKELSESNYKSGQKIVKIIKRVEVFEAFKNSGNKPEWMIMTVLPV
IPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLIELKAPGLIVQNEKRMLQEAVD
ALIDNGRRGRPVTGPGNRTLKSLSNMLKGKHGRFRQNLLGKRVDYSGRSVIVVGPNLKMY
QCGLPKEMALELFKPFVMRELVKRELANNIKNAKNQIERMEDHVWDILEDIIREHPVLLN
RAPTLHRLGIQAFEPILVEGRAIRLHPLVTTAFNADFDGDQMAVHVPLSKEAQAEARMLM
LAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERPGAIGEGMIFKDADEARMAYQNGYIHL
HTRVGIAAKSFNNPTFTEEQNKKLLITTIGKVIFNDILPAGFPFLNEPTKDNLEVATPKK
YFVATSELSEGGLKAYIKEKETAIPFKKGFLSKIISEIFNRFHITETSMMLDRMKDLGFK
YSSRAGITVGVSDVFVLPNKYDILAESQENVDKITNLFRRGLLTEEERYQNVIAQWAKAK
DVIQDQLMDSLPATNPIYMMSDSGARGNASNFTQLAGMRGLMASPSGRIMEMPVRSSFKE
GLTVLEYFISSHGARKGLADTALKTADSGYLTRRLVDVAQDVIVRENDCGTSRGLRVAAL
RNGTDEIESLQERLEGRYSKETVVHPETGKVIVEDGELITLDTAKEIEKAGIESVVIRSA
FTCNSRHGVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGADI
TQGLPRIQELFEARNPKGKALISEVDGTVTKVEVDNNHIRRIFVLSEIGEEREYQDYGTS
RMLVKENDEVKRGQALTEGSIEPKELLSIAGLEAVQSYLLTEVQKVYRMQGVEISDKHVE
VMVRQMLRKVRVINAGDTDLLPGSLVDIHRFTDENKKILKHRGNMATAKPVILGITKASL
ETESFLSAASFQETTRVLTDAAVKGKTDMLMGLKENVIIGKLIPAGTGMPRYNNIDVQYE
EDLEQEMEQELSKPIEQELHDELETI
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgtaaataattttgcatatatgaaaattagtttagcctctcctgaaaaaata
agaagttggtcttatggagaagttaaaaaaccggaaacgataaattatagaactttaaaa
ccggaaaatgatgggttgttctgtgaaagaattttcggaccaacaaaagattgggaatgt
gcttgcggtaagtacaaaagggtaagatataaaaatataaaatgtgataaatgtggtgtt
gacgttactttatcaaaagtacgtagagaaagaatggggcatttggatttagcagctccg
gtcagccatatttggtatttcaagggaataccaagccgtatgggtctgctattggatctt
agtcccagacaattagaagaagtaatctattttgcttcatatattgtaattgatccgggt
gaaacggactttatgaaaaaacaaattgtttcagagcgtgaagttcgtgaggcacgtagt
acattcggcgctaactcatttgtagctaaaatgggagcggaagctatccgtgatttattg
gcagagttagatattgaaaaagaattaagagatttaaaaaatgaacttaaagaattaagt
gagagtaattataaatcaggacaaaaaattgttaaaattattaaacgtgtagaagtgttt
gaagcgtttaaaaattccggaaataaaccggagtggatgattatgaccgttttacctgtt
atacctcctgaattacgtccaatggttcagttggacggtggacgttttgcaacgagtgat
ttaaatgatttgtatcgacgtgttattaatcgtaataaccgtttgaaaaaacttatagaa
ttaaaagcacccggcttaatcgttcaaaacgaaaaacgtatgttacaagaagcagtagat
gctttgatagataatggtcgtcgtggtcgtccggttaccggccccggcaacagaacttta
aaatcgttatctaatatgcttaaaggtaaacatggacgcttccgtcaaaacttactaggt
aaacgtgttgattactctggtcgttcagttatcgtagttggaccgaatttgaaaatgtat
caatgtggattaccgaaagaaatggcgcttgaattgtttaaaccgtttgtaatgagagaa
ttagtaaaacgtgaattggcgaataatattaaaaacgcaaaaaatcaaattgaaagaatg
gaagatcacgtttgggatatattggaagatattattcgtgaacacccggtattacttaac
cgtgcaccgacattgcacagattaggtattcaagcttttgaaccgattttagtggaaggt
cgtgcgataagattgcatccacttgtaactacagcgtttaatgctgactttgacggtgac
caaatggctgttcacgtgccgctatcaaaagaagcacaggctgaagcacgtatgttaatg
ctggctgcacaaaatattcttaacccaaaagatggaaaacctgttgttacaccgtctcaa
gacatggttctcggtaactattatttaacattagaaagaccgggagcaatcggtgaaggt
atgatttttaaagatgctgacgaagcaagaatggcatatcaaaacgggtatattcattta
catactcgtgttggtattgcagcaaaatcattcaataatccgacatttacagaagaacaa
aataaaaaattattaattacaacaattggtaaagttatttttaatgatatacttccggcc
ggctttccatttttaaatgaaccaactaaagataacttggaggtagcaacaccgaaaaaa
tactttgttgcaacaagtgaattatcagaaggcgggcttaaagcctatattaaagaaaaa
gaaaccgcaataccatttaaaaaaggtttcttgtcaaaaattatttcagaaatttttaat
agattccatattaccgaaacatctatgatgttggatagaatgaaagacttaggatttaag
tattcttcaagagctggtattaccgttggggtaagtgatgtgtttgtcttaccaaataaa
tatgatattcttgcagaatcacaagaaaatgttgataaaatcactaatctatttagacgt
ggtttattaacggaagaagaacgttatcaaaatgttattgcacaatgggcaaaagctaag
gatgttatccaagatcaacttatggactctcttcctgcgactaacccaatttatatgatg
agtgattcgggagcacgtggtaatgcgtcaaactttactcaacttgccggtatgcgtgga
cttatggcatctccatcaggtagaatcatggaaatgccggtacgttcatcatttaaagaa
ggacttacagtattggaatactttatttcttctcatggggcacgtaaaggacttgcagat
acggcattaaaaactgctgattcagggtatttgacacgtcgtcttgttgatgttgcccaa
gatgttattgttcgtgaaaatgattgtggaacatctcgaggtttaagagtggcagcactt
agaaatggaactgatgaaattgagagtttgcaagaacgcttagagggaagatacagtaaa
gaaactgttgttcatccggaaaccggtaaagtcatcgttgaagatggtgaattaatcacg
ttagatacagcgaaagaaatagaaaaagccggtatcgaaagtgttgtaattcgttcggcg
tttacatgtaatagtcgtcatggagtttgtgagaaatgctatggtaaaaacttagcaact
ggagaaaaagttgaagtaggagaagcagtaggtacaatagctgctcagtctattggagaa
ccgggaacacagcttacgatgcgtacattccataccggaggggtagcaggtgcagatatt
actcaaggtttacctcgtattcaagaattattcgaagcacgtaatccaaaagggaaagct
ttaatttcagaggtagatggaactgtaacaaaagtagaagtggataataatcatattcgt
agaatatttgtattaagtgaaattggagaggaaagagagtatcaagattacggtacaagt
cgtatgttagttaaggaaaacgatgaggttaaacgtggtcaagcattaactgaagggtct
attgaacccaaagaattactttctattgcaggattggaagctgtacaaagttacttattg
acagaggtacaaaaagtttaccgtatgcaaggggttgaaattagtgataaacacgttgaa
gtaatggtaagacaaatgttgaggaaagtgcgtgttatcaatgcaggagataccgacttg
ttaccgggttcattagtagatattcataggtttactgatgagaataaaaaaattcttaaa
catcgtggaaatatggcaacagcgaaacctgttattcttggtataacaaaagcatcttta
gaaacggaaagtttcttatcagcagcgtcattccaagaaacaacaagggttcttacagat
gcggcggttaaaggtaaaaccgacatgttgatgggacttaaagaaaatgttattattggt
aaattgatacctgccggtaccggtatgcctagatataacaacattgatgttcaatatgaa
gaagatttagagcaagaaatggaacaagaattaagtaaacccattgaacaagaattacac
gatgaattagaaactatttaa
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