Gemella sp. oral taxon 928: AXE85_06395
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Entry
AXE85_06395 CDS
T04256
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
got
Gemella sp. oral taxon 928
Pathway
got03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
got00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXE85_06395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
got03019
]
AXE85_06395
03009 Ribosome biogenesis [BR:
got03009
]
AXE85_06395
Enzymes [BR:
got01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXE85_06395
Messenger RNA biogenesis [BR:
got03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXE85_06395
Ribosome biogenesis [BR:
got03009
]
Prokaryotic type
rRNA helicases
AXE85_06395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEAT_PSME4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AME09809
LinkDB
All DBs
Position
complement(1386956..1388413)
Genome browser
AA seq
485 aa
AA seq
DB search
MTTFEELGVSKATVNSLTNMNFTTPTGIQKETIPYVFSGIDVLAQAQTGSGKTGAFGIPI
VDIVRKTDELQSLILAPTRELAQQVGEQLRFMSKDKGLKVSIIFGGTSIERQIQELKRRP
QIVVGTPGRIIDHINRRTLKLEKLNHLVLDEADEMLNMGFIDDVRYILSKITTKHQTLLF
SATMPKTIMELSKDFMTEYKLIKTMSDEDLNPDITEFATIARENEKLDALIGFLDVQNPN
LAIIFGRTKRRVDELSSALITKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVATDVAA
RGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPIEMPYLRDIENDRGQ
RMKMLRPYTNDEVKHARYNKMFAEVVSEIDKNHVEFNSLANKLLAQSNAEKIITILLSKI
INDKKEVDIELSFEKPLPRKQDKKKKYSSRNNNRRSRSDRNRKPKTEKNYDKKFFDKKGR
RMQNK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttgaagaattgggagtcagtaaagcaacagttaactcattaacaaatatg
aattttacaactcctacaggtattcaaaaagaaaccattccttatgttttttcaggaatt
gatgtacttgcccaagcacaaaccggttcaggtaaaacaggagctttcggaatacctata
gtggatattgtgagaaaaacggacgaattgcaatctttaatattggcaccaacaagagaa
cttgctcaacaggtgggagagcaacttagatttatgtcaaaagacaaagggttgaaagtt
agtataatttttggtggaaccagtattgaaagacaaatacaagaacttaaacgacgaccg
caaatagttgtaggaacgcccggtagaataatagatcatattaacagaagaacattaaaa
ttagaaaagcttaatcatttagttttagatgaagcagatgaaatgcttaatatgggattt
attgatgatgtgagatatattttgtcaaagataacaacaaaacatcaaacgttgttattt
tcagcaacaatgcctaaaacaataatggaattgtccaaagattttatgacagagtataag
ttaataaaaactatgagtgatgaagacttaaatcctgatattacagaatttgcaacaatt
gcaagagaaaacgaaaaactggatgcattgataggttttttagatgttcaaaatccaaac
ttagcaattatttttggaagaacaaaacgtcgcgttgatgaattatcaagtgctttaata
acaaaaggttatttagcggaagggttacatggtgatattactcaatctaaacgtttagaa
atattacgtaaatttaaaaataattcattgcagattttagtagctactgatgttgctgca
cgtgggatagatattagtgatgtaacgcatgtgtataattttgatattccacaagatgta
gaaagttatactcatagaattgggagaaccggaagagccggaaaatccggagttgccata
acgtttttaaatccgatagaaatgccttatttgagagatattgaaaacgatcgtgggcag
cgaatgaaaatgctacgtccttatacaaacgatgaagtaaaacatgccagatataataaa
atgtttgcagaagtagtttcagaaattgataaaaatcatgttgagtttaacagtcttgcc
aataaattattagcacagagtaatgcggaaaaaataataactattttattaagtaaaata
atcaacgataaaaaagaagtggatattgagttatcatttgaaaaaccgttaccacgaaaa
caggataagaagaaaaaatattcttcaagaaataataatagaagatcacgttcagacaga
aatagaaaaccaaaaactgaaaagaattatgataaaaaattctttgataaaaaaggtaga
agaatgcaaaataaataa
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