Gluconobacter oxydans 621H: GOX2500
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Entry
GOX2500 CDS
T00230
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gox
Gluconobacter oxydans 621H
Pathway
gox03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GOX2500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gox03400
]
GOX2500
Enzymes [BR:
gox01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GOX2500
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GOX2500
DNA repair and recombination proteins [BR:
gox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GOX2500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_Ribbon_Prim
Zn_Ribbon_YjdM
Zn_ribbon_IS1595
zf-dskA_traR
Phage_zn_bind_8
Zn_ribbon_6
NFACT_N
Zn_Ribbon_TF
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AAW62230
UniProt:
Q5FN17
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All DBs
Position
2700774..2701607
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AA seq
277 aa
AA seq
DB search
MPELPEVETVMRGFRDAFEGHRISHVTVNRPDLRWPFPADLREKLEGHHVLSFRRRAKYI
LVRLEGGWSMLLHLGMSGRLTIGRAGTNATPPAHEHLVLETDSGARAGLVDPRRFGMVDL
VRTSEEDSHRLLAHLGMEPLSDAMTGPALAELFRGRRSPIKSALLDQKLIAGLGNIYVCE
ALFRCGIHPERQACTLTGEETAALAEAIPQILEQAIASGGSSLRDYVQADGTKGAFQDLH
LVYGREGVPCPNCGAEHPIQRITQAGRSTFFCPTCQK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccagagcttccagaagtcgaaaccgtcatgcgcgggtttcgtgatgccttcgaaggg
caccgaatcagccatgtcaccgtcaaccgtcccgaccttcgatggccgtttcccgctgat
ctgcgggaaaagctggaaggccatcacgttctctcgttccgcaggcgcgcgaagtatatt
ctcgtgcgtctggaaggcgggtggagcatgctgctgcacctgggcatgtcgggccgactc
acgattggccgggcgggaacaaacgcgactccaccggcacacgagcatctggttctggaa
acggacagcggtgcgagagcagggctggtcgatccccggcgctttggcatggtcgatctg
gttcggacgtctgaagaggacagtcaccgccttctggcccatctgggaatggagcctctc
tcagacgccatgaccggcccagcactggcggaactgttccggggcaggcgctcgcccatc
aaatctgcgctgctggaccagaagctgatcgcaggacttggcaatatctatgtgtgcgag
gcgctgttccgctgcggcattcatcccgagcggcaggcctgtaccctgacgggagaagag
accgccgctcttgcagaggccattccgcagatcctggagcaggccatcgcgtccggagga
tcgtccctgcgcgactatgtgcaggctgacggcacgaaaggcgcgtttcaggacctgcac
ctcgtttatggtcgcgaaggggttccatgcccgaactgtggagcagaacatccgatccag
cgcatcacacaggcagggcggtcaacgttcttctgtccgacctgccagaaatag
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