Gordonibacter pamelaeae: GPA_03630
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Entry
GPA_03630 CDS
T02609
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
gpa
Gordonibacter pamelaeae
Pathway
gpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPA_03630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpa03019
]
GPA_03630
Messenger RNA biogenesis [BR:
gpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GPA_03630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
YtxH
HDOD
KH_KhpA-B
ZT_dimer
Propep_M14
D5_N
KH_2
FUT8_N_cat
Nup54
ZapG-like
Motif
Other DBs
NCBI-ProteinID:
CBL03406
UniProt:
D6E6Q9
LinkDB
All DBs
Position
365301..366833
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AA seq
510 aa
AA seq
DB search
MPEIIWLLIGAVIGIALGFVGARFLASSSAKRAAQEAETVVADAKRQAETLRREAIVEAK
DEVLKLKQEAQAENKERMREVRAAENRVSQREESLDRRVESLDAREHQISSQQGQLDRRE
RDLEEAAREINRRLERVAGMTPEEAKAELLDTLKDEVVHESAAIIRDSEARTKAEADKKA
RSILSLAIQRVAADHSAENTVSAIHIPSDDLKGRIIGREGRNIRSFEQLTGTNLIIDDTP
ECVTISCFDPVRREIGRVTMENLVADGRIHPARIEEMFGKAEAFVNQRVQEAGEQAAFDT
GIHDLHPELVRTLGRLRYRTSYGQNVLNHSLEVAYLSGVMAAELGLDPIPAKRAGLLHDL
GKAVDHEVEGSHAVIGADLARRFGEKQDIVHAIEAHHNDVEPSSVLAVLVQAADAVSAAR
PGARKETLDAYIKRLEKLEEIANSYKGVERTYAIQAGREVRVMVEPEVVDEAATTVLAHD
IAHRIENEMQYPGQVKVVVIRESRAVGVAK
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagatcatctggctgctcatcggtgccgtgataggcatcgccctcggcttcgtc
ggtgcccgcttcctggccagctcgtccgcgaaacgtgcggcgcaagaggccgagaccgtg
gtggccgacgcgaaacgacaagccgaaacactgcgccgcgaggccatcgtcgaagccaag
gacgaggtcctgaagctgaagcaggaggcccaggccgagaacaaggagcgcatgcgcgag
gtgcgcgccgccgagaaccgcgtgtcgcagcgcgaggagtcgctcgatcgccgcgtggag
tcgctcgatgcccgcgagcatcagatatcgtcccagcagggccagctcgaccgtcgcgag
cgcgacctcgaggaggccgcccgggagatcaaccgccgcctggagcgcgtggccggcatg
acgccggaggaggcgaaggccgagctgctcgacaccctcaaggacgaggtcgtgcacgag
tccgctgccatcatccgcgactccgaggcccgcacgaaggccgaggccgacaagaaggcc
cgctccatcctgagcctggccatccagcgcgtcgcggccgaccactccgccgagaacacg
gtgagcgccatccatatcccctccgacgacctcaagggccgcatcatcgggcgcgagggc
cgcaacatccgctcgttcgagcagctcaccggcacgaacctcatcatcgacgacaccccg
gagtgcgtgaccatctcgtgcttcgacccggtccgccgcgagatcggccgcgtgaccatg
gagaacctcgtggccgacgggcgcatccatccggcgcgcatcgaggagatgttcggcaag
gccgaggcgttcgtgaaccagcgcgtgcaggaggcgggcgagcaggccgccttcgacacg
ggcatccacgacctgcatcccgagctcgtgcgcacgctcggccgcctgcgctaccgcacc
tcctacggccagaacgtgctgaaccactcgctcgaggtggcctacctctcgggcgtcatg
gccgcggagctcgggctcgatcccatcccggccaagcgcgcggggctcttgcacgacctg
ggcaaggccgtcgaccacgaggtcgagggcagccatgccgtcatcggcgccgacctggcg
cgccgtttcggcgagaagcaggacatcgtccatgccatcgaggcgcaccacaacgacgtg
gagccctcgagcgtgctcgccgtgctcgtgcaggccgccgacgccgtgtcggccgcccgc
cccggcgcccgcaaggagacgctcgacgcctacatcaagcgtctcgagaagctcgaggag
atcgccaactcgtacaagggcgtggagcgcacgtacgccatccaggccggccgcgaggtg
cgcgtgatggtggagcccgaggtggtcgacgaggccgccacgaccgtgctcgcccatgac
atcgcgcaccgcatagagaacgagatgcagtaccccggccaggtgaaggtcgtggtcatc
cgtgagagccgcgcggtcggcgtcgcgaagtag
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