Gordonibacter pamelaeae: GPA_11980
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Entry
GPA_11980 CDS
T02609
Name
(GenBank) 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
gpa
Gordonibacter pamelaeae
Pathway
gpa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GPA_11980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gpa03000
]
GPA_11980
03400 DNA repair and recombination proteins [BR:
gpa03400
]
GPA_11980
Enzymes [BR:
gpa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GPA_11980
Transcription factors [BR:
gpa03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GPA_11980
DNA repair and recombination proteins [BR:
gpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GPA_11980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
CBL03871
UniProt:
D6E824
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All DBs
Position
1190948..1192453
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AA seq
501 aa
AA seq
DB search
MAEAQESTLRQDLNHPESRKRALYAAFASKDARFDGQAFVGVSSTGVYCRPVCHVHMPKY
ENCTFYETAAEAEAAGYRPCLVCRPELAPGHSIADASANLARRAASLLREGCTSGESLER
MAERLGYTDRHLRRAFQREFEVTPVQYLQTCRLLLAKSLLTDSDLPVSQVAAAAGFKSVR
RFNDLFKERYRLTPTAVRKSARRRTPSGDRVAFSLSYRPPYRFAELLAFFRARQLEGVEA
VDEHAYARVVRMQHGDEEVLGWVRVADDERRGALAVTMSASLLPVTSQVIARVRRQFDVD
CDPQAVHEGIASLDDAVPGAAVLGTRVPGCFDPFETAVRAVLGQQVTVVAANRLAARIVE
RYGKPMDTGIPGLTHAFPTAAEVAALEPIEDALGVLGVIKTRSRTIAEIARLLEAGDLRF
DAGAVVAEQMERLLAVKGIGPWSANYLAMRVLNHPDAFMETDAGVKHALPHLEPKERLEL
AEQWRPWRSYAVLCLWNSLAE
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagcacaggagagcaccctgcggcaggacctcaaccatcctgaatcgcgcaag
cgggcgctgtacgcggcgttcgcgtcgaaagatgcgcgattcgacggccaggcgttcgtg
ggcgtgtcctccacgggcgtgtactgccgccccgtctgccacgtgcacatgccgaagtac
gagaactgcacgttctacgagacagcggccgaggcggaggctgccggataccgcccgtgc
ctcgtgtgccgcccggagctcgcgcccggccactccatcgccgacgcgtccgcgaacctc
gcgcggcgggcggcctcgctgctgcgcgagggctgcacgagcggcgagagcctcgagcgc
atggcggagcggctgggctacaccgaccgccacctgcgacgggccttccaacgcgagttc
gaggtgacgccggtgcagtacctgcaaacctgccgcctccttctggcgaagagcctgctc
accgactcggaccttccggtaagccaggtggccgcggccgccgggttcaagagcgtgcgg
cgcttcaacgacctgttcaaggagcgctatcggctcacccccaccgccgtgcgcaagagc
gcccgacggcgcacgccgtcgggcgaccgggtggccttctcgctgagctaccgtccgccg
taccgcttcgccgaactgctcgcgttcttccgcgcccgccagctggaaggcgtggaagcg
gtggacgagcacgcctacgcgcgcgtcgtgcgcatgcagcacggcgacgaggaggtgctc
ggctgggtgcgcgtggccgacgacgagcggcgaggcgcgcttgccgtcacgatgagcgcg
tcgctactgccggtgacgtcgcaggtcatcgcccgcgtgcgccgccagttcgacgtcgac
tgcgacccacaggcggtgcacgagggcatcgcctcgctggatgacgcggttccgggcgcg
gcagtcctgggaacgcgggtgcccggctgtttcgaccccttcgagacggccgtgcgggcc
gtcctcggccagcaggtgacggtggtggccgcgaaccggctggcggcgcgcatcgtagag
cgctacggcaagcccatggacaccggcatcccggggctcacgcacgcgttccccacagcg
gcggaggtcgccgcgctcgaacccatcgaggatgcgctcggcgtgctgggcgtcatcaag
acgcgctcgcgcaccatcgccgagatcgcgcggctgctggaggccggcgacctgcgcttc
gatgccggcgccgtggtggcggagcagatggaacgcctgctggcggtgaagggcatcggc
ccgtggtcggcgaactacctggccatgagggtgctcaatcatcccgacgccttcatggag
accgatgccggcgtgaagcacgccctgccccacctggaaccgaaggaacggctggagctg
gccgagcagtggcgcccgtggcgcagctacgcggtgctgtgcctgtggaactcgctggcc
gaatag
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