Gordonibacter pamelaeae: GPA_18860
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Entry
GPA_18860 CDS
T02609
Name
(GenBank) Type IV secretory pathway, VirD4 components
Organism
gpa
Gordonibacter pamelaeae
Pathway
gpa03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
gpa00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
GPA_18860
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
IstB_IS21
AAA_7
Motif
Other DBs
NCBI-ProteinID:
CBL04294
UniProt:
D6E997
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Position
complement(1895399..1897288)
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AA seq
629 aa
AA seq
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MAKNGKNGVPVATTARKREASQGFIALMAGISLVAFVAVNHVAGYVIPVASSRGPAAALT
SIPVALLDFARSPWALSLDPAAVAVGLAGPAAVVLVYLLGGKKADKPTMAGMEHGTARWG
EEDEKDRHADTDNPLNNIPLAQGVELCLDPDAIGTRRKGFVEINRNVMCFGPPGTGKTFY
LFVPALLRFWRPTDPSSITSDTKGTTVKRMLPYLMRHDRVVKVLNTKDPSNSHGYNPLKY
TRNDLEVLIAVDTIMGNTTGRKPDEGVDGDFWEKSEKSVFVSIIGGLRELKEIAPGLDVE
VNIPTMADILLTAEASSDDEDPNTPTTIDRFFALIEHLKPDSYACRTYKGLKLAGKGRTM
NSILVSCAVRLMPFNLPVIRELMWRDEMEIDRIPFEGTNLFVVADDAGGQLDFVLAMFYQ
QTFRTLYNIADNLPGERFPVPVVSFIDEMLNMGNIPYKERILMTARSRNMPIVMGLQSMD
LAKEKWGENILGAILDACDTIVYMGGGRSKESRAYISESLGTQTVYEHTVSETVSARIMG
SNDSAQSSYQSLGRPLLDEAEVDKIPREQCIVHFSGAAPLMVGKYRTQDTDEYKDSPFAP
DRRGEAVTGPFPLQEMREHNARVRASLAA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaacgggaaaaacggggtgcccgtcgcaacgacggcgcgcaagcgggaggcg
agccaggggttcatcgccctcatggccggcatctccttggtcgcgttcgttgcggtcaac
catgtggcgggctacgtcatccccgtcgcctcgtcgcgcgggcccgcggcggcgctcacg
agcatcccggtagccctgctcgacttcgcgcggagcccttgggcgctgagcctcgacccg
gccgccgtggccgtcgggctcgcggggccggcggccgtcgttctcgtgtacctgctcggc
ggcaagaaggccgacaagccgaccatggcgggcatggagcacggcaccgcgcgctggggc
gaggaggacgagaaggacaggcacgccgacacggataacccgctgaacaacataccgctc
gcccagggcgtcgagctctgcctcgaccccgatgcgatagggacgcgccggaagggcttc
gtggagatcaaccgcaacgtgatgtgcttcggcccgccaggcacgggcaagacgttctat
ctgttcgtccccgcgctcctgcggttctggcggcccaccgacccgtcgagcatcacgagc
gacacgaagggcacgaccgtgaagcggatgctgccgtacctcatgaggcacgaccgcgtg
gtgaaggttctcaacaccaaggatccgtccaacagccacggctacaacccgctcaagtac
acgcgcaacgatttggaggtgctcatcgccgtcgacaccatcatgggcaacaccacagga
cgcaagcccgatgagggcgtcgacggggacttctgggagaaatccgagaaatcggtgttc
gtgtccatcatcggaggcttgcgcgagctgaaggagatagctccggggctcgacgtcgag
gtgaacataccgacgatggcggacatcctgctcaccgccgaggcttcgagcgacgacgag
gatccgaacacgcccacgaccatcgaccgtttcttcgcgctgatcgagcatctgaagccg
gacagctacgcctgccgcacctacaaaggcctgaagctggccggcaagggccggacgatg
aactccatcctggtgtcgtgcgcggtcaggctcatgcccttcaacctccccgtcatccgc
gagctcatgtggcgcgacgagatggagatcgaccgcatacccttcgagggcaccaacttg
tttgtcgtggccgacgatgctggcggccagctcgacttcgtcttggccatgttctaccag
cagacgttccgcaccctctacaacatcgccgacaacctgccgggggagaggttcccggtc
ccggtcgtgtcgttcatcgacgagatgttgaacatgggcaacataccctacaaggagagg
atcctcatgaccgcccgctccaggaacatgccgatagtgatgggcctccagagcatggat
ctcgcgaaggagaaatggggcgagaacatcttgggcgcgatcctcgacgcctgcgacacg
atcgtctacatgggcggcggccgctcgaaggagagccgcgcgtacatctcggagtccctg
ggtacccagacggtctacgagcacacggtgagcgagacggtgagcgcccggatcatgggc
agcaacgattccgctcagtcgtcgtaccagtcgctcggccgcccgctgctcgacgaggcc
gaggtcgacaagataccgcgggagcagtgcatcgtccacttctcgggcgccgcgcccctc
atggtgggcaagtaccgcacgcaggacacggacgagtacaaggactcgcccttcgcgccc
gaccgaaggggcgaggccgtcacagggcccttccctttgcaggagatgagggagcacaac
gcgagggtgcgggcatcccttgccgcttga
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