Gordonibacter pamelaeae: GPA_28740
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Entry
GPA_28740 CDS
T02609
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gpa
Gordonibacter pamelaeae
Pathway
gpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPA_28740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpa03019
]
GPA_28740
Enzymes [BR:
gpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GPA_28740
Messenger RNA biogenesis [BR:
gpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GPA_28740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HEM4
Fe-ADH
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBL04857
UniProt:
D6EAW0
LinkDB
All DBs
Position
2900022..2901359
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AA seq
445 aa
AA seq
DB search
MQVIGTTFFRAAYDANRSRSPAIKFCNAWRCALSSTFQDLGLSETTLAAVAQMGYNAPTP
VQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIERIDRAKKPGSPRALVVSPTRELALQ
IDAACTQLAKGSGLRVVTVVGGVPYKGQLSKLSRGVDILVATPGRLHDLMERGDVKLRDV
EILVLDEADRMLDMGFWPTMKKIVAATPSSRQTLLFSATLDRKVMQSVSAILRDPAFVEV
AHKGETSDTIEQFIVPVGSMQKASLLRLLLAERGSKRVIVFTDTKTRAEICTGQLKRAGF
RAESIHSDKTQAQRKRALAAFSKGDVDVLVATDVLARGIDVPDIAYVVNYELPENPDDYV
HRIGRTGRAGEAGCSISFVSPEAKAQLLDIEKLLGSKIPTLAVEGYDATEAERALANRFV
SKTTRGSAAFSRSLRRNPTGFGRRR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgatcggcacaactttcttccgcgccgcatacgatgcgaaccgatcccggtcg
cccgccatcaagttctgcaacgcttggagatgcgctttgagttcgacgtttcaagacctc
ggcttgtccgagaccaccctcgccgccgtcgcacagatgggctacaacgcccccaccccc
gtgcaggagcaggccatcccgctcgcgctcgaaggccgcgacgtcgtggccgccgccgtc
acgggaaccggcaagacgaccgcgttcgcactgcccgtcatcgagcgcatcgaccgcgcg
aagaagcccgggtcgccgcgcgcgctggtcgtgagccccacgcgcgagctcgccttgcag
atcgacgccgcctgcacgcagctggcgaagggctcgggcctgcgcgtggtcactgtggtg
ggcggcgtgccctacaagggccagctgtcgaagctctcgcgcggcgtggacatcctcgtg
gccacgcccgggcgcctccacgacctcatggaacgcggcgacgtgaagctgcgcgacgtg
gagatcctcgtgctcgacgaggccgaccgcatgctcgacatgggcttctggcccaccatg
aagaagatcgtggccgccacgccctcctcgcgccagacgctgctcttctccgcgacgctc
gaccgcaaggtcatgcagagcgtctcggccatcctgcgcgatcccgcgttcgtcgaggtg
gcgcacaagggcgagacctccgacaccatcgagcagttcatcgtccccgtgggctcgatg
cagaaggcgagccttttgcgcctgttgctcgccgagcgcggaagcaagcgcgtcatcgtg
ttcaccgacaccaagacccgcgcggagatctgcacaggccagctcaagcgcgcgggcttc
cgcgcggagtccatccactccgacaagacgcaggcgcagcgcaagcgcgcgctcgccgcg
ttcagcaagggcgacgtggacgtgctcgtggccaccgacgtgctggcccgcggcatcgac
gtgccggacatcgcctacgtggtgaactacgagctgcccgagaaccccgacgactacgtg
caccgcatcggccgcaccggccgcgccggggaggccggctgctccatctcgttcgtgagc
cctgaggcgaaggcgcagctgctcgacatcgagaagctgctggggtcgaagatccccacg
ctggccgtggagggatacgacgcgacggaagccgagcgagcgctcgcgaaccggttcgtg
tcgaagaccaccaggggcagcgccgcgttctcgcgctccctgcgccgcaaccccaccggc
ttcggcaggcgccgctag
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