Gordonibacter pamelaeae: GPA_31840
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Entry
GPA_31840 CDS
T02609
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gpa
Gordonibacter pamelaeae
Pathway
gpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPA_31840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpa03021
]
GPA_31840
03019 Messenger RNA biogenesis [BR:
gpa03019
]
GPA_31840
Transcription machinery [BR:
gpa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GPA_31840
Messenger RNA biogenesis [BR:
gpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GPA_31840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
SAP
Spore_III_AA
AAA_25
HeH
Motif
Other DBs
NCBI-ProteinID:
CBL05027
UniProt:
D6EBD0
LinkDB
All DBs
Position
complement(3212647..3214335)
Genome browser
AA seq
562 aa
AA seq
DB search
MSENESATVAPEAPAPAAKPTRRRSTSVNAGAAAKAPADKAAEPQAEAASPAPRTAKTPR
KSVKAGGQAAPQQGSGTAKRPGQNSSGNKGGQGQNQGNRQKQNNQRQNASGGKQNNNNRR
QRRPHDNNRGPREVQPSVSRDDLAKLKVAELREKAAELGVDAAGLKKAELVEAVFGASVK
AEGFIEVSGILDILADGYGFLRTQGYLPSETDCYVGLSTIRRNGLRKGDMVSGQTRPARE
NEKYAAIQKVTAINGTPIEECGNRVRFGDLTPVYPDECFHMEHGKNTVTARVIDLVSPIG
KGQRGLIVSPPKAGKTTVLKNIAAAITANNPDVHLMCLLVDERPEEVTDMERSIKGEVVS
STFDMPTENHIAVSELVIERAKRLVECGKDVVVLLDSLTRLARAYNLAQPASGRILSGGV
DSTALYPPKRFLGAARNIEGGGSLTILASALIDTGSKMDEVIFEEFKGTGNMELKLDRNL
ADRRIFPAIDPVASGTRKEELLLDPQEAPLIWAVRRILSNTNSTERAMDMLIKSLKQTET
NQEFLLRTAKKAQHTKGDAIEI
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaacgaatcagcaaccgtggcgcccgaggcgcccgccccggcagccaagccc
acgcgccgccgctcaacgagcgtgaacgccggagccgccgcgaaggcgccggccgacaag
gcagcggaaccgcaggccgaggccgcatcccccgcaccgcgcacggccaagacgccgcgc
aagtccgtcaaggccggcggccaggccgcaccgcagcagggctccggaaccgccaagcgc
ccgggccagaactccagcggcaacaaaggcggccaaggccagaaccagggcaaccgccag
aagcagaacaaccagcgccagaacgcctccggcggcaagcagaacaacaacaaccgccgc
cagcgccgtccgcacgacaacaaccgcggtccccgcgaggtgcagcccagcgtgtcgcgc
gacgatctggccaagctcaaggtggccgagctgcgcgagaaggcggccgagctgggggtg
gacgccgccggcctcaagaaggccgagctcgtcgaggccgtgttcggggccagcgtgaag
gccgagggcttcatcgaggtgtccggcatcctggacatcctggccgacggatacggcttc
ttgcgcacgcagggctacctgcccagcgagacggactgctacgtgggcctgtccaccatc
cgccgcaacggcctgcgcaagggcgatatggtgtccgggcagacgcgcccggcgcgcgag
aacgagaagtacgccgccatccagaaggtcacggccatcaacggaacgcccatcgaggag
tgcggcaaccgggtgcgcttcggcgacctcacgccggtctaccccgacgagtgcttccat
atggagcacggcaagaacaccgtcacggcccgcgtcatcgaccttgtgagccccatcggc
aagggccagcgcggcctgatcgtcagcccgccgaaggccggcaagaccacggtgctgaag
aacatcgcagccgcaatcaccgcgaacaaccccgacgtgcacctcatgtgcctgctcgtg
gacgagcgtcccgaggaagtcaccgacatggagcgctccatcaagggcgaggtcgtgtcc
tccacgttcgacatgcccacggagaaccacatcgccgtgtccgagctggtcatcgagcgc
gccaagcgcctcgtggagtgcggcaaggacgtggtcgtgctgctggactcgctcacgcgc
ctcgcgcgcgcctacaacctggcgcagccggcatcgggccgcatcctgtccggcggcgtg
gactccacggcgctctacccgcccaagcgcttcctgggcgccgcccgcaacatcgagggg
ggcggcagcctcaccatcctcgcctcggcgctcatcgacaccggctccaagatggacgag
gtcatcttcgaggagttcaagggcacgggcaacatggagctcaagctcgaccgcaacctc
gccgaccgccgcatcttcccggccatcgatcccgtcgcctcgggcacccgcaaggaggag
ctgctgctcgacccgcaggaggcgccgctcatctgggccgtacgccgtatcctgtcgaac
acgaacagcaccgagcgcgccatggacatgctcatcaagtcgctcaagcagaccgagacc
aaccaggagttcctgctgcgcacggccaagaaggcccagcacaccaagggcgacgccatc
gagatctag
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