Gamma proteobacterium HdN1: HDN1F_00030
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Entry
HDN1F_00030 CDS
T01300
Symbol
recF
Name
(GenBank) Recombinational DNA repair ATPase
KO
K03629
DNA replication and repair protein RecF
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HDN1F_00030 (recF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_00030 (recF)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HDN1F_00030 (recF)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_29
AAA_16
AAA_27
ABC_tran
SbcC_Walker_B
NACHT
AAA_13
AAA_22
AAA_33
Motif
Other DBs
NCBI-ProteinID:
CBL43586
UniProt:
E1VFE3
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Position
2964..4145
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AA seq
393 aa
AA seq
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MAIVKLEISDFRNLKAVEIAPAQGLNWVVGPNGSGKTSLLEALHLLATGKSFRANNLRSC
IRGGAKTCRVVCLKNAAAYPDVIQRLGVERDLSGGVRAVLDQLEVTKLSGLANQIAVCTL
LPDSINLLIGDPSLRREFLGWSMFHVEHNSDYLQVLRDYRFSLQQRNALLRRLNGSELPL
SGNEAIRSKELDGWDRQLGKFALKLDERRSHFMTLFRERYFSLISKEQLNLRSSSYSSNE
VHFELLRGWPDGVSLEDALAEARMRDIERGFTGSGPHRADIRISYAGKPVRDYFSRGQLK
HLISICVLVQADLIRSSRGKDGLVFIFDDAFAELDENHASSVLAALRSISVQTFVTTSDA
AVANRHVDAIQDRMFHVEHGDVQMSVSIPKENY
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggctattgtgaaacttgagatttcagattttcggaatctcaaggccgtggaaattgct
ccggcccaggggcttaattgggttgttggcccaaacggttcgggaaagacaagtttatta
gaagctctccatctcctagcgaccggaaaatctttccgtgcaaacaatctacgtagttgc
attcgcgggggggcaaaaacctgccgtgtcgtatgtcttaaaaacgcggcggcctaccct
gacgttatacagagattaggggttgaacgtgatctgagcggcggtgttcgcgctgtgctt
gatcaattagaagtaacaaaactctccggtttggcaaaccagattgcggtctgtaccctt
cttcctgattcaatcaacctacttattggcgatccgtctttacgcagggagtttttgggg
tggtcgatgttccacgtggaacataactcagattatctccaagttctcagagactatcgc
ttctccctgcagcagaggaatgcgctgcttagaagactgaatggcagcgaactgcccctt
tcaggcaatgaggccatccggtcgaaggaattggatggttgggataggcagcttggtaaa
tttgcgctgaagctggatgagagaaggtctcacttcatgactttgttccgagagcgttat
ttcagcctgatctcaaaggagcagttgaaccttcgctcttcaagttactcaagtaatgag
gttcatttcgaacttttgcgtggttggccggatggtgtatcgctggaagatgcacttgcc
gaggcgcggatgcgggatattgagcgcggctttaccggatcaggtcctcatcgagcagat
attcgaatttcctatgcaggaaagcccgtgcgggattatttttcccgaggccaactcaag
catctcataagtatttgtgtattggttcaagcggatttaattcgctcctctcgtggtaag
gatggtctcgtctttattttcgatgatgctttcgcagagctagatgaaaaccacgcgagt
tcggttctcgccgcgcttaggagcatttcggttcaaacattcgttacgacaagcgatgct
gccgtagcgaacaggcatgtagacgcaatccaagatagaatgttccacgtggaacatggt
gatgtccaaatgagtgtaagtatcccaaaggagaactattag
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