Gamma proteobacterium HdN1: HDN1F_01040
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Entry
HDN1F_01040 CDS
T01300
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDN1F_01040 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpb03021
]
HDN1F_01040 (rho)
03019 Messenger RNA biogenesis [BR:
gpb03019
]
HDN1F_01040 (rho)
Transcription machinery [BR:
gpb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HDN1F_01040 (rho)
Messenger RNA biogenesis [BR:
gpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HDN1F_01040 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
AAA_25
OB_RNB
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
CBL43687
LinkDB
All DBs
Position
complement(145103..146362)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPVADLVHMAEEMGLENIARTRKQDIIFAILKRHAKGGEDIYGDGVLEILQD
GFGFLRSSEGSYLAGPDDIYVSPSQVRRFNLRTGDTISGKIRPPKEGERYFALLKVNDIN
YDVPASTKNKVLFENLTPLFPQQRLKAELGNGSTEDITARVIDLVAPFGKGQRGLIIAPP
KAGKTMMLQNIAHSISRNNPECILIVLLIDERPEEVTDMRRSVRAEVVASTFDEPPTRHV
QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALERPKRF
FGAARNIEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEIHLDRRVSEKRVFPAINI
NKSGTRREDLLTSEDELKKMWILRKILHPMDEISAIEFLIDKMRDTKTNDEFFDSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcaccgaacttaagcaaaaacccgtcgccgacctcgtacacatggccgaggaa
atgggcttagaaaatattgcccgcacccgcaaacaagacatcatcttcgccatcctgaaa
cgccacgcaaaaggcggtgaggatatctacggcgacggcgtgcttgaaatcctgcaagac
ggcttcggctttttgcgctcctctgagggctcataccttgcagggccagacgatatctac
gtttctcccagccaagtgcgccgttttaatctacgcactggtgacacgatttccgggaaa
atccgtccacccaaagaaggtgaacggtattttgccctgctgaaagtcaacgacatcaac
tacgatgtacccgccagcaccaaaaacaaagtgctgttcgagaacttaacgccactgttc
ccgcagcaacgcttgaaggcagaactaggcaacggctccaccgaagacattaccgctcgc
gtcattgaccttgttgcccctttcgggaaaggccagcgcggtctgattatcgcccccccc
aaagcgggcaagacgatgatgctgcaaaatattgcacactcgatctcacgcaacaaccca
gagtgcattctgatcgttctgctgatcgacgagcgccctgaagaagtaaccgatatgcgc
cgctccgtgcgtgctgaagtcgtggcatcaaccttcgatgagccacctacacgtcacgtt
caggtggctgagatggtgctggaaaaagccaagcgccttgtggagcacaaaaaggatgta
gtcatcctgctggattcgatcacccgtcttgcccgcgcctacaacacggtcatcccctcc
tccggcaaagtactcaccggcggcgtcgacgcgaatgcgctggagcggcccaagcgcttc
ttcggagcggcgcgtaacattgaagaaggcggcagcctaaccatcctcgcaaccgcactg
gtagataccggctccaagatggacgaagtgatctacgaggaattcaaaggcaccggcaac
atggaaatccatctggatcgccgcgtgtccgagaagcgggtgttcccagcgatcaacatc
aacaaatccggcacacgccgcgaagatttattgacctcggaagacgaactcaaaaagatg
tggattcttcgcaagatcctgcatcctatggatgaaatcagcgcgattgagttcctgatt
gataaaatgcgcgacaccaaaaccaatgatgaattctttgattcgatgaagcgcaagtag
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