Gamma proteobacterium HdN1: HDN1F_02040
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Entry
HDN1F_02040 CDS
T01300
Symbol
polA
Name
(GenBank) DNA polymerase A
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03030
DNA replication
gpb03410
Base excision repair
gpb03420
Nucleotide excision repair
gpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDN1F_02040 (polA)
03410 Base excision repair
HDN1F_02040 (polA)
03420 Nucleotide excision repair
HDN1F_02040 (polA)
03440 Homologous recombination
HDN1F_02040 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpb03032
]
HDN1F_02040 (polA)
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_02040 (polA)
Enzymes [BR:
gpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDN1F_02040 (polA)
DNA replication proteins [BR:
gpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HDN1F_02040 (polA)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HDN1F_02040 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDN1F_02040 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
CBL43787
UniProt:
E1VG45
LinkDB
All DBs
Position
263399..266161
Genome browser
AA seq
920 aa
AA seq
DB search
MPSNPPIVLVDGSSYLYRAFHAMPPLTTSNGQPTGAIKGVLNMLRKLQADVKPLRMAVIF
DAKGKTFRDDIFPEYKAQRPPMPDDLRAQIEPLYDCIRALGLPLISISGVEADDVIGTYC
VEASRLGERVLVSTGDKDIAQLVNEHVTLINTMNDTLLDRDGVIEKFGLPPEQIVDYLTL
VGDSVDNIPGVPKCGPKTALKWLDDYGSLDNLIAHADEIKGKVGENLRASLEQIPLSRQL
ATIKCDVPLAQGVMELQLENANTEKLVELYQQLEFKSWLHDLLGSNEAAGAHQNGASVSI
ASPTAESIPTQDGFAFEPENDYHTILDAAELERWVVRLLASDVFSVDTETTSLNYMDAEL
VGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYVLNALKPILEAETPAKIGQNLKYDMNVL
ARYGITLSGVRFDTMLESYVLDAAATRHDMDSLALKYLGQKTIAFEDVAGKGAKQITFDQ
VPLLQAATYAAEDADVTLKLHQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARID
VAALKQQSRQLGERMAELEAEAHTLAGQPFNLASPKQLGEILYDQLQLPILKKTPKGAPS
TDESVLQDLAHDYELPKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVASTGR
LSSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLIDAFA
RGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAFGLARQLGISREQAQAYM
DRYFHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQAAERVAINAPM
QGSAADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVFEVPNDVVPDAIEQIQKRMSGAA
SLKVPLIVEAGTGTNWEQAH
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgccatccaatccgcccatcgtgcttgtcgatggctccagctatttgtatcgcgccttt
cacgcaatgccgcccctgaccacatccaacggccagcccaccggcgcgatcaagggcgtg
ctaaatatgttgcgtaagctgcaagcagatgtaaagccgcttcggatggcggtcattttt
gacgccaagggaaaaaccttccgcgacgacatttttcccgaatataaagcgcagcggcca
cccatgcccgatgatttgcgcgcccaaatcgagccgttatacgactgcatacgcgcccta
gggctgcctttgatctctatcagcggcgtggaggcggatgatgtcattggcacgtactgt
gtggaggcaagccgcttgggtgagcgggtattggtgtcaacaggtgataaagatattgcc
cagcttgtcaatgagcacgttacgctgatcaataccatgaacgacactttgctggatcgt
gatggcgtaatcgaaaaattcggcctgccgccagagcagatcgttgactatctcaccctt
gtgggggatagcgttgataacattcccggtgtgcccaagtgtgggccaaaaacggcgctt
aaatggcttgatgactacggcagcttagacaatctcatcgctcacgcagatgagatcaaa
ggtaaggttggcgaaaatctgcgagccagccttgagcagattccgctatcccgccagctt
gcaacgattaaatgcgacgtgccgcttgcgcaaggcgttatggagttgcagctggagaat
gcaaataccgaaaaattggttgagctctaccagcagttggaattcaaatcttggctgcat
gacttgcttggcagcaatgaagcggctggtgcccatcagaacggcgcgtccgtgagcatc
gcatccccaacggcagaatctatacctacgcaggatggttttgcctttgaaccggaaaat
gattatcacaccattctggacgccgcagaacttgagcgttgggttgtgcgccttttggcc
agtgatgtattctccgtagacaccgaaaccaccagcctgaattacatggatgcggaactg
gtaggaatctccttctcccttcaagcgggcgaagccgcctacgtccccgtcggccatacc
gccatcggaacgccggaacaactgcccctagactacgtgctgaatgcactcaagccgatc
cttgaagccgaaacccccgcaaaaattggccaaaatctgaaatacgacatgaacgttttg
gcccgttacggcataacgcttagtggtgttcgctttgacaccatgctggaatcttatgtg
ctggatgcagcagcgactcgtcatgatatggacagccttgcactgaaatacctaggccag
aaaaccatcgcatttgaggatgtcgccggcaagggcgccaagcaaattacctttgatcag
gtgccattgttgcaagcggcaacctatgcagcagaagacgccgacgttacattaaaactc
catcaagctctctggccgcgcgtgcagaaaacgccaacacttacaaaggtatttcaagaa
attgaaatgccgctagtcggcgtactctcgcgaatggaaagagaaggagcgcgcattgac
gtagcggcattaaaacagcagagtcgacagcttggtgagcgtatggccgagttggaagcc
gaagcccacacgctggccggacaaccattcaacctcgcttctcccaagcaactcggtgaa
atcctctacgaccagcttcagctgccgatcctgaaaaaaacccccaagggtgcaccctct
accgacgagagtgtgttgcaagacctcgcccacgattacgagctccccaaagtgctgctg
gaatatcgcggctgcgccaaattaaaatcaacctataccgataaactgccggaactggtg
aacccgcgcactggacgcatccatacctcttaccatcaggcagtcgcgtccactgggcgc
ttatcttcgtctgacccaaacctgcaaaatatcccgattcgtaatgagtcggggcgtaaa
attcgccaagcatttattgcggagcccggttttacaatggtggcggcggattattcgcag
atcgagctgcgcatcatggcgcacctttcggatgacgagagcttgattgatgcctttgcg
cgcgggctggatattcaccgtgcaacggcagcggaagtcatgggagttccgctggaggat
gtgaccagcgacatgcgccgctctgcaaaagcggtaaactttggtttgatttacgggatg
tctgcatttggactggcgcgccagttgggaatctcccgagagcaggcgcaagcgtatatg
gatcgttattttcatcgctacccaggtgtgttgcgctatatggaagatatccgcaagcaa
gcgcacgatcagggctatgttgagacattgtttggccggcgtctttatttgcctgaagtg
cgtgctgcgagcaaaatgcgtagacaggccgctgagcgcgtggcgatcaacgcacctatg
cagggttccgctgccgatattatcaagcgcgccatgatcgacattgatacttggctacgc
acccagccggcaaagatccgcatgattatgcaagtacacgacgagctggtgtttgaagtg
ccgaacgatgtggtgcccgatgcgatcgaacagattcagaagcgcatgtcgggagcggcc
tctcttaaggtgcctttaattgttgaggcaggaacgggtacaaactgggagcaggcgcac
taa
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