Gamma proteobacterium HdN1: HDN1F_04020
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Entry
HDN1F_04020 CDS
T01300
Symbol
recQ2
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDN1F_04020 (recQ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpb03019
]
HDN1F_04020 (recQ2)
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_04020 (recQ2)
Enzymes [BR:
gpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDN1F_04020 (recQ2)
Messenger RNA biogenesis [BR:
gpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HDN1F_04020 (recQ2)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HDN1F_04020 (recQ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Pribosyltran
ResIII
ETF
RecQ_Zn_bind
PglZ_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CBL43985
LinkDB
All DBs
Position
494799..496931
Genome browser
AA seq
710 aa
AA seq
DB search
MNRTQAQQLLKTALANPAAEFRDGQWEAIDALVNHRQKLLVVQRTGWGKSSVYFISTKIF
RDRGMGPTIIVSPLLALMRNQIESAQRLGIVAETMNSTNQNDWQAVTQQILNNQVDGLLI
SPERLANDNFIESVLQPIADRIALMVIDEAHCISDWGHDFRPDYRRIVNILRQLPANTPV
LGTTATANNRVVEDIQAQLGDIQIHRGPLTRESLALQTMILPDQASRLAWLAQVIPTLPG
TGIVYVLTQRDADMVAKWLNQQGVSAFAYYSGVTHPNFVNNAGKEDTDLYRQFLETQLLE
NNIKVLVATTALGMGYDKPDLGFVLHYQAPSSIVAYYQQVGRAGRGIENAIGVLMSGTED
NDIHAFFRRTAFPSQDDVQRLLAALDDADGLSLEKLEKEANLPQKRIEHVLKYLRTESPS
PVIAIGKTWFRAPVRYQMDLEHIRKITAIREREWSEINDYLNTSGCLMLALRNALDDPSQ
EACGKCENCIAEPVLTKVFDQEIGIRATQFLRHSEEIIKPRKQIAASNDEAARTFVEYEF
PRNLGDLVAQEGRVLSRWGDAGWGRTVADNKHAGRFSDELVEAMAEMIQQRWQPDPAPQW
VCCVPSRNHPELVPDFARRLAARLDLPFVDAVSKVKDNQPQKGQQNRFHQCRNLDGAFAV
TQLYQGQPVLLVDDIVDSGWTLTVVAALLQQAGSGVVYPVALASSSVKDS
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgaacccaagcccaacaactattaaaaactgcgctggctaatcccgctgctgaa
tttcgtgatggtcagtgggaagcgattgatgccttggtaaatcatcgacaaaaattgttg
gtggtgcagcgcactggttggggcaaaagctcggtttactttatcagcaccaaaatattc
cgcgaccgaggcatgggcccaaccattatagtttcgcccctgttggccttgatgcgcaac
cagattgaatcggcgcagcgtttgggcattgttgcggagaccatgaactccaccaatcag
aacgactggcaggcggtgacacagcagattttgaataatcaagtcgacggcttgctgatt
tcccctgagcgcttggctaatgacaactttatcgagtcggtattgcagcctattgccgac
cgtattgccctgatggtgattgacgaggcgcattgtatttcagactggggtcatgatttt
cgtcctgactaccgccgtatcgtgaatattcttcgccagttgcctgctaacacgccggta
ctgggcactacagccacggcgaataaccgcgttgtcgaggacattcaagcccagcttggt
gatattcaaattcatcgcggtccgctgactcgtgagagtcttgctctacaaactatgata
ctgcctgatcaggcctcacgtttggcttggttagcgcaagtgatacctacattgcctggc
acaggaattgtgtatgttctgacccaacgtgatgccgatatggttgcaaaatggctcaat
caacaaggtgtttctgcgtttgcatattacagtggggtcactcatcccaattttgttaat
aatgccgggaaagaggatacggatctctatcgtcaatttctggaaacccagttactagaa
aacaacataaaggttctcgttgcaactactgcattagggatgggttatgacaaacctgac
ctaggctttgtgcttcattaccaagccccaagttcgattgttgcttactatcaacaagta
ggtcgcgccggtcgtggaatcgaaaatgctattggcgtactaatgtcaggtactgaggat
aacgacattcatgctttcttccgccgaacagcctttccaagtcaagatgatgttcagcgt
ctacttgcagcattagacgatgcagacggattgtcacttgagaagttggagaaagaagca
aacctgccgcaaaagcgaatagagcatgttttgaaatatttgcgtactgagagtccatcg
cctgtcattgcgattggaaagacttggtttagagctcctgttcgctaccaaatggatcta
gagcatattcgtaaaattacagcaattcgtgaacgcgaatggagcgagattaatgattat
ctcaatacttcaggttgtttaatgttggctttacgtaatgcgcttgatgacccttcacaa
gaagcttgtggcaaatgtgagaactgtattgcggagccagtgcttaccaaggttttcgat
caagaaattggaataagagcaactcagtttttaaggcactcagaagaaattattaagccc
cgtaagcaaatagcagcatcgaatgatgaggcagcgagaacatttgttgaatatgaattt
ccgcgtaatctcggtgacttagtcgctcaagagggccgtgttttatcccgctggggtgat
gccggttgggggcggacggttgctgataacaaacatgccgggcgtttcagtgatgaattg
gttgaagccatggcagaaatgattcagcagcgttggcagcccgatcctgctcctcagtgg
gtgtgctgcgtgccgtcgcgtaatcatcctgaattggtaccggattttgcgcgccgtctg
gctgcacgattggatctaccgtttgtggatgcagttagcaaagtcaaagacaaccagccg
caaaaaggccagcagaatcgtttccatcaatgtcgcaatctggatggtgcgtttgctgtg
actcagctttatcaggggcaaccggttttgttagtggatgacatagtggattccggctgg
acgctaacggtcgtcgcggcactcttacagcaagctggcagcggcgtggtttaccccgtc
gcgctggcttcatcttcggtgaaagactcatga
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