Gamma proteobacterium HdN1: HDN1F_05650
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Entry
HDN1F_05650 CDS
T01300
Name
(GenBank) conserved hypothetical protein
KO
K21470
L,D-transpeptidase YcbB
Organism
gpb
Gamma proteobacterium HdN1
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gpb01002
]
HDN1F_05650
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
gpb01011
]
HDN1F_05650
Peptidases and inhibitors [BR:
gpb01002
]
Cysteine peptidases
Family C82
HDN1F_05650
Peptidoglycan biosynthesis and degradation proteins [BR:
gpb01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
HDN1F_05650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
TEX13
Motif
Other DBs
NCBI-ProteinID:
CBL44148
UniProt:
E1VH56
LinkDB
All DBs
Position
complement(691076..692758)
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AA seq
560 aa
AA seq
DB search
MGGLLWGCATTTTQPPEIINRGSSQLGSAVDSKRSATASATIQDLLAKARINALRHPDFQ
KYRDLLRSAYETRSFQPRWIESGNLNAQGTQLLQVLAQSYAEGLEPHDYDTKWLQQQTST
LNSHDSAAIGTTDLAMSVALARLIHDVNVGRIPPREAGIKIDTRAREAEAMSLVKQAFNG
ISPDQAFRNARPKFVLYDHLKNALAHYRELAAHRKGISLPSLPKSLKPGDTWSGIPALAD
GLRYLGDFTGAPPKNNRYTHDLVAGVKHFQGGHGLGVDGIIGQSTWSALSVPFSVRVRQI
ELSMERMRWLSEQMADERAIVVNIPQFQLWAFPGKTQASSLSMNVVVGKSVGNSTPILLN
DVKSVVFNPYWNVPSSITRKEMLPKLRENPEYLVSQNLEMVGNGEVIATAPTPEQIEAIS
KGIYRLRQRPGPGNALGRVKFEFPNSDAIYMHDTPNRGAFSRSRRDFSHGCIRLSDPEKM
ADFLLTGQPGWDKKRVSEAMKSDERRTVTLRNPVPVLIFYTTAMVDSTGRTVLLEDIYGY
DSQLERALIASDERKQKQKN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgggtggcctattatggggatgcgccacaaccaccacgcaaccaccggaaatcatcaac
cgtggcagctcccaactgggaagtgcggtcgatagtaaacgctcggcaacggcctctgcg
accattcaagacttgctcgcaaaagcgcgtatcaatgccctgcgccatcccgattttcaa
aagtatcgcgacctcctccgcagcgcctatgaaactcgcagctttcaaccacgctggatc
gaaagcgggaatctgaatgcacaaggcacacagctcttacaagtactcgcacagtcgtat
gccgaaggattagagccgcacgactacgatacaaaatggctgcaacaacagaccagcaca
ctgaattcacacgacagcgccgcgatcggcaccaccgacctcgctatgagcgttgcgcta
gcccgattgatacacgacgtaaacgtgggtcgcatcccacctcgtgaagccggcatcaag
attgatacccgcgctcgtgaggccgaagccatgagcttagtaaaacaagcatttaatggc
atttctccagaccaagccttccgtaatgcgcgccctaaatttgtcctttacgaccacctg
aaaaacgcactcgcgcactaccgtgaactcgcagcgcaccgcaaggggatttccttaccc
tcgctaccaaagtcactaaagccgggcgatacgtggtctgggattcccgcgctcgcagac
ggcttgcgctatctaggcgatttcactggcgcaccgcccaaaaacaatcgctacacccat
gacttggttgctggcgtgaagcactttcagggaggccacgggcttggcgttgatggcatc
atcggccagagcacctggagcgcactaagcgtgcctttcagtgtgcgtgtgcgccaaatc
gaactcagcatggaaagaatgcgctggctaagcgaacaaatggcagacgagcgcgccatc
gttgtcaatatcccacagttccagctatgggccttccctgggaaaactcaggcatccagc
ctcagcatgaacgttgtcgtcggaaaatctgtgggcaatagcacccccatccttctcaac
gacgtcaagagcgtggtgtttaacccctactggaacgttccaagcagcattacccgcaaa
gaaatgctgcccaaattgcgcgaaaatccggaatatctggtaagccaaaacttggaaatg
gtcggtaacggcgaggtcatcgcaaccgcgccaacgcccgagcaaatcgaagcgatcagc
aaaggcatctatcgcctacgccagcgcccaggccccggcaatgcgctcggtcgcgtaaag
tttgaatttccgaatagcgacgcgatctatatgcacgacacgccaaaccgtggcgcattt
agccgcagccggcgagatttcagccacggctgcatccgcttgagtgatccggaaaaaatg
gccgatttcctcctgaccggacagcctggatgggataaaaagcgcgtgtctgaagccatg
aaatccgatgagcggcgcacagttaccctgcgcaaccccgttccagttctcatcttttac
acaacggcgatggtggacagcacaggcagaacggtcttgcttgaagatatctacggctac
gacagccagttagagcgggccctgatcgcctcggatgagcgcaaacaaaagcaaaagaac
tag
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