Gamma proteobacterium HdN1: HDN1F_07060
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Entry
HDN1F_07060 CDS
T01300
Name
(GenBank) DEAD/DEAH box helicase
Organism
gpb
Gamma proteobacterium HdN1
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
MZB
ALGX
HEAT_EF3_GNC1
Motif
Other DBs
NCBI-ProteinID:
CBL44289
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All DBs
Position
859672..864987
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AA seq
1771 aa
AA seq
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MNNVFDFRDQLVSEYSSFSRSFSRIAAPDIRDEVERQYADGRYWPEPLVQINPNYQRKGT
VQQLVAEGVLHGACADIFQVGKTEGHPQPLHLYAHQVEVLDKERRKQSYVVTTGTGSGKS
LSFFIPIIDRILKAKDQEQTARTRAIVIYPMNALANSQLEELDKFLYGYPAEQQPFTVAR
YTGQESKAERDRIADNPPDILLTNFMMLELILTRFDEVDRRVVNHCHGLEFLVLDELHTY
RGRQGADVALLVRRLRERLQANELVCIGTSATMSSTGSLADRKKTVAEVSSKLFGASITE
QDIIGETLERVTGPLKEVAAVQAQLAGAVARTQFVWADFDAFRVDPLSIWVELNLGIELP
DLSLEPGEPPRRAKPMTIQAASEKLAKDAGCEVNTARQALQRFLVAAHEIRTPQGRPPFA
FKLHQFISGPGKVLATLEAQGRRHITLDAQRFAPGRQDEGVQLYPVHFCRDCGQEYLPVW
QSKQTPATYTPREIDDITADGNEEVYYGFLCPATSNIPYRGDIEDLPETWLDLSRAQPKI
KPNYKKAVPYSVSVDAQGRERHGEPFWYIPGKFRFCLSCGQLHEAHGKDINRLASLSGEG
RSSATTILTLSALRQLFNNTEPASGQPDPRKLLGFTDNRQDAALQAGHFNDFVFLLTLRA
GLIGALQNNDGELSEEQLPDAVFKALGFDRLDEATLVEYLRTPKLMGLARQEAQRTLRYI
IGYRLLRDLRRGWRFNNPNLDQLGLLTINYRSLDEFCADTTAFSKNSTLAKLNEANREKL
CRLIFDSMRRGLCLETRYLDPVEQDKARTIAFQRLNERWAIAPDEQLETAKYLILSKRPE
YKGKPRTDLVTGGPRSRLLREIKTAPFWKETAFAGQVASWKDPEWVDLVEALLQAASFYG
YVQKHSIDQQLVGWRLNAAALDWCLPDATLADDDPRANQFFRALYVNIADLLRKPSHPLF
DFEAQEHTAQVDAGRRQLLEQRFRYTDKDRKDWAENPSHEAPLERLPVMFCSPTMELGVD
ISALNTVYLRNVPPTPANYAQRSGRAGRSGQQALVITYCASLSPHDQWFFHHANEMVHGI
VRAPTLDLANRDLVESHLQAVWLANAHIALDVSIAPMLDLDQPNKPLIKSYQDALHDPAV
TQRAQDSAARVIAQLQEELAGSDWFKPDYVQKVIERAPQAFSDALERWRVLFDATRTQMN
MADQLVKSHTASHAERQNAQRRYGDAARQYAVLLKTGNSQNNDFYTYRYLASQGFLPGYN
FPRLPLMAWIPARGGATANGKDDEGSMVSRPRFLALSEFGPRSLIYHQGRTYRVVRAKLN
VGNADHISGNSQLATISSLVCSQCGYGHMGEKSLTDEPSGAQPLVNCCENCDALLTERDW
VRELYRVETVETVAVERISINDEDRQRQGFELQTTYRFLPGPDGVIQQRKAEVKQGNEVL
AELTYAPAARLWRINRGWRRRKDKEQLGFYINPITGTWSKQDAPDAGDDNGQDDTLMDKV
PNQRIVPFVEDHRNLLILAPVHALSLEAMATLQAALKRGIEITFQIEESELVAEPLPKVD
ERRALMFYEAAEGGAGVLTRIASDPASLAQVASNALKLLHHNAPQGSWKLEDLAALEQTN
ALGNRICEAGCYQCLLSYFNQPDHENINRRNVDALKVLVALANAEVKPKQVSPPPRQEDR
QQDDRLKQWLDAVAKAGLRQPDATQVLVNQGAATAAGQYKSARALVFLDAIDAETATLLT
DKGWQVLCFSDPSQWQAQFAAHADVFGSREE
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgtatttgacttccgtgatcagctcgtcagcgagtacagctcattttcacgc
agtttttcccgaatagctgcaccggacatcagggatgaagtcgagcggcaatacgccgat
gggcgctattggccggagcctctcgtccaaatcaaccccaactaccagcgtaaggggacg
gtacagcagttggtcgcggaaggcgttttgcacggcgcttgtgcagacatcttccaggtg
gggaaaacagaggggcaccctcagccgctgcacctttacgcacatcaggtggaagtgctg
gacaaggagcgaagaaagcagagctatgtggttactacaggcaccggttccggtaaatcg
ttgtctttcttcattcccatcattgaccgaatcttgaaggcaaaagatcaagaacaaact
gcacgaactcgcgccatcgtcatttatccgatgaatgctctggcaaacagccagctcgaa
gaactcgacaaatttctttatggctacccggcggagcaacaacctttcacggtagcacgg
tataccgggcaagagtcaaaggctgagcgtgacaggatcgcagacaacccgcccgacatc
ctgctcaccaactttatgatgctagagctgattctcacgcgttttgatgaggtggatcgc
cgcgtagtaaaccattgccacggtctggagtttttggttctcgacgagctacacacctac
cgtggccgtcaaggtgcggatgtcgcgttgctggtgcgtcgtttgcgcgagcgcctgcag
gccaacgaacttgtttgcattgggacgtcagccaccatgtcgagcacgggaagcttggct
gatcgaaagaaaaccgtcgctgaggtgtccagcaagctttttggcgcaagtatcactgag
caagacattattggcgaaactctagagcgtgtgaccggcccgctgaaagaggtcgccgcc
gtacaagctcagctggcgggtgccgtcgcgcggactcaattcgtatgggcagattttgat
gcgtttcgagttgacccgctctcaatctgggttgagctgaaccttggtattgaactgcct
gacctcagccttgaaccaggcgagccgccacgccgtgcaaagcctatgaccatccaagcg
gccagcgaaaaactggccaaagacgcaggatgtgaagttaataccgcacgacaggctctg
cagcggtttctggtggcagcacatgaaatcaggacgccacaagggcggccgccctttgcc
tttaagttgcaccaatttattagtggccccggcaaggtgctcgccacgcttgaagcgcaa
ggacgccgtcatatcacgctggatgcgcagcgttttgctccgggtcgccaagatgaaggt
gttcagctctatccagtgcacttttgccgcgactgtgggcaagaatatttgccggtttgg
caatcaaagcaaacgcccgcaacctacaccccgcgagaaattgatgacattaccgcagat
ggcaacgaagaggtctattacggctttctatgccctgcaacctcaaatattccctatcgc
ggagacattgaagacttgccagaaacgtggctggatctcagtcgggcacaacccaaaatt
aaaccgaactataaaaaggccgtaccctatagcgtcagcgtagatgcacaaggccgcgaa
aggcatggtgaaccattctggtacatccccggaaaattccgcttttgcctgagttgcggt
cagttgcatgaggcacacggcaaagacattaaccgcttggccagcctttcaggagaaggc
cgatcttcagctaccacgattttgacgctgagcgcactgcgccaactttttaacaatacg
gaaccggccagcggtcaacccgacccgcgcaaattacttggctttaccgacaaccgccaa
gatgctgcgctacaggctgggcactttaacgacttcgtttttttgctgacattgcgagcg
gggctcattggcgctttgcaaaacaatgacggggagttgagcgaagaacagttacccgat
gctgtgttcaaggcgctcggctttgatcggctggatgaagccaccttggtcgaatacctg
cgcacccccaaactcatggggctggcacggcaagaagcgcagcgcaccttgcgctatatc
attggttaccgcctgttgcgtgacctgcgccgaggttggcgattcaacaacccgaaccta
gatcaactgggcttgctgacaattaattaccgcagcctggatgagttttgtgccgacacc
actgcattcagcaaaaatagcaccttagcgaaattgaacgaagcgaatcgggaaaagtta
tgccggcttatttttgactcaatgcgccgaggactttgccttgaaacgcgctatctcgac
cctgtagaacaagacaaggcgcgaactatcgcatttcagcgcttgaatgagcgctgggcg
attgcgcctgacgagcagctagaaacggccaaatatctaattctgagcaagcggcctgaa
tacaaaggcaagcctagaaccgatcttgttacaggtggcccgcgctcaaggttgctgcgc
gagattaaaacggcccccttttggaaagaaaccgcttttgccggacaggttgcaagctgg
aaagacccagaatgggtggatttggttgaggcacttttacaagccgcatcattctatggc
tatgttcagaagcattcgattgaccaacaattagtgggctggcggctgaatgcggctgcc
ttggattggtgtttgccagacgctacgcttgcggacgacgatccgcgcgccaatcagttc
ttccgtgcgctctatgtgaatatcgccgacctgttgcgcaagccaagccatccactcttt
gattttgaggcgcaggaacacaccgcccaagttgatgcgggaaggcgtcagctgctggaa
cagcgcttccgttacaccgacaaagatagaaaggactgggccgaaaacccctcgcacgaa
gccccgttggagcgtctgcccgtcatgttctgctcgcccaccatggagttgggtgtcgac
atatctgcgctcaatactgtgtacctgcgcaacgttccgcctacacctgccaattacgca
cagcgcagcggtcgagcggggcgctcgggccagcaagccttggtaattacctattgtgct
tcgcttagcccgcacgatcagtggtttttccatcacgccaacgaaatggtgcatggcatt
gtgcgtgcgccaaccctagatttggctaaccgcgatctggtggaaagccatctgcaagcg
gtctggctggctaatgctcatatcgcgctcgatgtcagcattgcccccatgctggatctt
gaccagccaaataagccgttaatcaagtcctaccaagatgcgctgcatgatccagcggtt
actcagcgcgcccaagacagtgcagcacgtgtcatcgctcagctccaagaggaactggct
ggcagtgattggttcaagcctgactatgtccaaaaggtgattgaacgggcgccccaagcg
ttctcagacgcgctcgaacgttggcgtgtcttattcgatgccacgcgtacgcagatgaac
atggctgatcagctcgtcaaaagccataccgcatcgcacgctgaacgccagaatgcgcag
cgtcgttacggcgatgcagctcggcaatatgctgtgctactgaaaacgggcaatagtcaa
aataacgacttttacacctatcgctatctggccagccagggctttttgccgggctataac
tttccgcgtttaccgctcatggcttggattcccgcacgtggcggggccacagccaacgga
aaagacgacgagggcagcatggtcagccgcccgcgttttttggcgctttctgaatttggc
ccgcgcagcctgatctaccaccaaggccgtacgtatcgcgtggtgcgtgccaagcttaat
gtcggcaatgcagatcatatttctggcaacagccagcttgctaccatctcctcgctggtt
tgcagtcagtgcggttatggccatatgggtgaaaaaagtcttacggatgagcccagtggt
gcacaacctttggttaattgctgcgagaactgcgatgcgcttttaaccgagcgcgactgg
gtgcgtgagctctatcgcgttgaaacggtagaaacagttgcagtagagcgtatttccatc
aacgacgaagaccgacagcgccaagggtttgagctgcaaaccacttaccgcttcttgcca
ggcccagacggcgtcatccagcagcgcaaagctgaggtcaagcagggcaatgaggttttg
gccgagttgacctacgcccccgccgcgcgtttgtggcgcatcaaccgtggctggcgtagg
cgtaaagacaaagagcagcttggcttttacatcaaccccatcacaggcacttggagcaag
caggatgccccagatgcaggtgatgataacggccaagacgatacactcatggacaaagtg
cctaaccagcgcatcgttcccttcgtcgaggatcaccgcaacctgcttatcctagcgcca
gtgcatgctttatcacttgaagccatggcaaccttgcaagcagctctcaagcgcggtatc
gagataaccttccagattgaagagtcagagctggttgccgagccgttgcccaaggtagac
gagcgccgtgctctgatgttttacgaagcagcagaagggggtgccggtgtgcttacccgc
attgcgagtgaccccgccagtttggcgcaggttgctagcaacgcactcaagctgctgcac
cacaacgctccgcaaggttcttggaagctggaagacttggctgcattagaacaaaccaac
gcgctgggtaatcgaatttgtgaagcaggttgctatcaatgcctgctgtcttactttaac
cagcccgatcatgaaaacatcaaccgtcgcaatgtcgatgcgctcaaggtgctggtggct
ctggccaatgcagaagtgaaaccgaagcaagtatcaccaccgccaaggcaggaggatagg
cagcaggatgatcgactaaagcaatggcttgatgcggtagcaaaagcaggcctgcgccaa
cccgatgccacgcaagtgcttgttaatcaaggcgcggcaacggctgctggccaatacaaa
tcggcccgcgccttagtatttctggatgcgatcgacgccgagacagcgaccctgctgact
gacaaaggctggcaagtcctgtgtttttccgatccatcgcaatggcaagcgcagttcgca
gcccatgccgatgtgttcggctcaagagaagaataa
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