Gamma proteobacterium HdN1: HDN1F_08720
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Entry
HDN1F_08720 CDS
T01300
Symbol
holA
Name
(GenBank) DNA polymerase III delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03030
DNA replication
gpb03430
Mismatch repair
gpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDN1F_08720 (holA)
03430 Mismatch repair
HDN1F_08720 (holA)
03440 Homologous recombination
HDN1F_08720 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpb03032
]
HDN1F_08720 (holA)
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_08720 (holA)
Enzymes [BR:
gpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDN1F_08720 (holA)
DNA replication proteins [BR:
gpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDN1F_08720 (holA)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDN1F_08720 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
HP_1247_M
E2-E1mid
Motif
Other DBs
NCBI-ProteinID:
CBL44455
LinkDB
All DBs
Position
complement(1070430..1071464)
Genome browser
AA seq
344 aa
AA seq
DB search
MNLRTDQIKPHFERQGPQALYIVSGEEPLLMQEACDAIRASARASGYLEREVYASDAHIS
WPAIFEAANSLSLFGERKLIELRLDKVKFDDSAKKILSSYLERPNPDTLLLMILPKLEKA
FSTTKWFQSIEQKAIVIQVWPLETKDLPRWIDTRIRQAGMQASREAIALLAERVEGNLLA
AAQEIEKLRLLNGAGHLDAAAIESTVSDHARYNLFDLVDQSLEGNAETALKMLHFCRASG
EEPLILLWAFVKELRALYAMLEQQQRGTPPAKLLQDFRIWNKRKPTIEKALNKQSLLRVE
TALSISSQIDRAAKGQAAGNAWQGLTALIMVLAGHPLTSPEIPG
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctgcgtaccgaccagattaagccgcacttcgagcgacaggggccacaagcactt
tacattgtgagcggcgaagagccgctgctaatgcaagaagcttgcgacgccattcgagca
tcggcgcgcgcctccggctaccttgagcgagaagtgtacgcatccgatgcccacattagc
tggcccgccatcttcgaggccgccaacagcctgtctctctttggcgagcgaaagctgatt
gagctccgcttagacaaagtaaaattcgatgacagtgcaaaaaaaatcctgagcagctac
ctcgaacgccccaaccccgacactctgctgttaatgatcctgcccaagctggaaaaggcc
ttctctaccacaaaatggtttcaatcgattgagcaaaaagccatcgtaatccaagtttgg
ccattggaaacaaaagacttaccgcgctggattgacacccgcatacgtcaagccggaatg
caagccagccgcgaagccatcgcgctgttggcagagcgcgtcgaaggaaacctactggcg
gccgcacaagaaattgaaaagctgcgcctacttaacggcgccggtcacttggacgccgca
gccattgaaagcacagtatccgaccatgcacgctacaacctttttgaccttgtcgaccaa
agcctcgaagggaacgcagaaaccgcgttaaaaatgcttcacttctgccgagcaagcggt
gaagaaccgcttattctgctatgggccttcgtgaaagagctgcgcgctctctatgctatg
cttgaacaacagcaaagaggcactccgcccgcaaagctccttcaagactttcgaatttgg
aacaagcgcaagccgacgattgaaaaagccttaaacaagcagagtttgctgcgcgtggag
acagccttatccatttcctcccaaattgaccgcgcggcaaaggggcaggcagcgggcaat
gcgtggcagggccttactgctttaatcatggttctggcaggccaccccctaaccagcccc
gaaattcccggatag
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