Gamma proteobacterium HdN1: HDN1F_12930
Help
Entry
HDN1F_12930 CDS
T01300
Symbol
mfd
Name
(GenBank) Transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDN1F_12930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_12930 (mfd)
Enzymes [BR:
gpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDN1F_12930 (mfd)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HDN1F_12930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
RecG_dom3_C
ERCC3_RAD25_C
IstB_IS21
Rpn9_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CBL44876
UniProt:
E1VJ84
LinkDB
All DBs
Position
complement(1602033..1605521)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTSLPVFQPLPTRPGDIKRWGNVKASVGSLAMIEAAKAHEGLTVVIAPSSQAALQAELDA
VFFNDAGLEVLLFPDWETLPYDVFSPHEAIISQRLATLARLPQLHKGVLIIPLTTLLHRL
PPTNYLAAHSLHLDIGQTFQIEAMRQRLQETGYRCVNTVEEHGDFAVRGAIFDIFPMGSP
LPYRIELFDDEIDTLRTFDPETQRSLDKVDSVRLLPAREFPLDAAGIRHFREQFKEQFDA
DTRHCALFQDVSGGIASAGIEYYLPLFFSQMATLFDYLPENTLVIHRETLNANANTFLAE
ASHRYDELGHDLRRPILPPNKIFLPLEELNQRLGDFRRLTLHSGPEEDKPGRTNLPCHTP
PDLAIHSKAQQPLSKLEAHLLQCKADKRQVLFCVETAGRKETLLELLQRIRIQPRSVETW
DDFLTQSDATSITIAPLSEGMELDSPLISIITEPQLFGEHVMQVRRRKRSDDGSGDQIIK
NLTELKIGAPVVHIEHGVGRYHGLQTLTIDGQAQEFLTLEYAGGSKLYVPVASLQLISRY
SGAEDSSAPLHRLGTEQWAKEKRKAQEQVHDVAAELLNIYARRAAKAGYAFKLGKADYQA
FVDGFRFEETPDQESAIQAVMADMTSPRPMDRLVCGDVGFGKTEVAMRAAFIAVQSGKQV
AILVPTTLLAQQHYETLKDRFSNTPVNIEVLSRFRTSKEQTRALALLEEGRIDIVVGTHK
LLQENIRFKDLGLIIVDEEHRFGVRHKEKLKAIRADVDMLTLTATPIPRTLNMALSSIRD
LSIIATPPAKRLSIKTFVREARDSLIKEAILRELLRGGQVYYLHNEVSTIEKTAQHIESL
VPEARVAIAHGQMRERELERVMTDFYHKRFNVLVCTTIIETGIDVPSANTIVMDRADKLG
LAQLHQLRGRVGRSHHQAYAYLLTPNAKALSDDAHKRLEAITLAHDLGAGFTLASHDLEI
RGAGELLGDEQSGHMHAIGFSLYMEMLNRAVKAIKQGKTPNLDQPLDLDAEVNLRIPALL
PSDYLADVHARLILYKRISAAEDDAALDELRVEMIDRFGPLPDGAKNLFAITRLQKLASG
LGITKIDAGPKGGRLEFGPHPKVDPLTLVKLVQSMPQKFKLEGADKLRFMLESETAQERI
ELVRELLARISPKASALKQAGT
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacctctctgcccgtattccagcctctccctacccgacccggcgatatcaagcgctgg
ggcaatgtaaaggcgagtgtcggcagcttagccatgatcgaggcggccaaagcgcacgaa
gggctgaccgtcgtgattgcgcccagctcccaagctgcacttcaggcggagctggatgca
gtttttttcaatgatgcagggcttgaggtgctgctttttcccgactgggaaacgcttcct
tatgacgtcttttcaccgcatgaggccattatttcacagcgtttggcaacgcttgcgcgt
ctgcctcagttgcataaaggcgtgttgattatcccgctcaccacgttattacaccgccta
ccgcctacaaactaccttgcagcacacagtttacacctcgacattgggcagacttttcag
atcgaagccatgaggcagcggctgcaagaaaccggttatcgttgcgtcaataccgttgag
gagcacggggatttcgcggtacgtggggccattttcgatattttccctatgggtagcccg
ctcccctaccggatcgagctattcgacgacgaaatcgacacgctacgtaccttcgaccct
gaaacacagcggtcgcttgacaaagtagacagcgttcgcctactgccagcacgcgaattt
ccattggatgctgcaggtattcgccattttcgtgagcagttcaaagaacaattcgacgct
gacacccgccactgcgcattatttcaagacgtgagcggggggattgccagcgctgggatt
gagtattatctcccgctattcttctcgcagatggcaacgctatttgactatttgccggaa
aacacgctggtcattcaccgcgaaacgctgaacgccaacgcaaacacgtttcttgctgag
gccagtcatcgttatgacgagttggggcatgatctacgccgcccgattcttccgcccaac
aagatttttttaccccttgaagaactcaatcagcgcttgggcgattttcgccgcttaacg
ctacatagcggcccagaagaagacaaacctgggcgcaccaaccttccttgccatacgccg
cccgatcttgcgattcacagcaaagcccagcagccattgagcaaactggaagcccatctg
ttgcaatgcaaagcggacaagcgccaggttttattctgcgtggaaactgcaggtcgcaaa
gaaaccctgctggaattgctgcagcggattcgcatccagccacgcagcgttgagacttgg
gatgattttctgactcaatccgatgcaaccagcatcaccatcgccccactctcggaaggc
atggagctggattcgccgctgatctcgatcattacagagccacagcttttcggcgagcac
gtcatgcaggtgcggcgccgcaaacgcagcgacgatggttctggcgatcagatcatcaag
aacctgaccgaattgaaaatcggcgcgcctgtcgttcatattgagcacggtgtaggtcgc
taccacggcttgcagaccttgaccattgacggccaggcacaggaatttctcactcttgaa
tatgcaggtggttcaaaactgtatgtgcccgtggccagcctgcaactgatcagccgctac
agcggtgcagaagatagttccgcgccactacaccgcctcggtacagagcagtgggcgaaa
gaaaaacgcaaagcgcaagagcaagtgcacgacgttgccgctgagctgctaaacatttac
gcgcgccgcgctgcaaaagcaggttacgccttcaagcttggcaaggccgactatcaagcc
tttgtggatggcttccgctttgaagaaacgcccgaccaagaaagtgccattcaggcggtg
atggcggacatgacctcaccacgcccgatggatcgcctcgtttgtggagacgtgggattc
ggcaagacggaagtggccatgcgtgcagcgtttattgcggtacagtctggcaaacaggtc
gccattttggtacccaccacgctgctcgcccaacagcactatgaaacgctgaaagatcgt
ttcagcaatacgccggtgaacatcgaagtattatcacggtttcgcaccagcaaagaacaa
actcgcgcactggctttgttggaagaaggccgcatcgacatcgtagtgggcacgcacaag
ctgctgcaagagaacatccgtttcaaggacctcggtctgatcatcgtagatgaagaacac
cgctttggcgtgcgccacaaagaaaagctgaaggcgattcgcgccgatgtcgatatgctc
acactcaccgccacgccaattccgcgcaccttgaatatggcgttatccagtattcgtgat
ttgtccattattgcaacgcctcctgccaagcgtttatccatcaaaacgtttgtacgggaa
gctcgtgattcgctgatcaaagaagcaatcctgcgtgagttgctgcgcggcggccaagtg
tattatctccacaacgaggtcagcactatcgagaaaaccgcccagcatatcgaatcgctt
gtgcccgaagcgcgcgtcgcaattgctcacgggcagatgcgcgaacgcgagctggaacgg
gtaatgacggatttttaccacaagcgcttcaatgtgcttgtttgtaccaccatcattgaa
actgggatcgacgtgccttctgccaacacgattgtgatggatcgtgccgataagctaggg
cttgcccagttgcaccaactgcgcggccgcgttgggcgctctcaccaccaagcctacgcc
tacctgctaacgcccaatgcgaaagcactttctgacgatgctcataagcggctggaagcc
atcaccctcgcccacgatcttggcgcgggctttacccttgccagccacgatctagaaatt
cgcggcgcaggagaattgctgggagatgagcaaagcggccatatgcatgccattggtttt
tcgctctatatggaaatgctgaatcgtgcggtaaaagcaattaaacaaggcaaaacaccc
aatctggatcaaccgctagacttggatgctgaagtcaatttgcgcattcctgcgctgctg
ccgagtgattatctggcagatgttcacgcacgcttgattctgtacaaacgtatttccgct
gcagaagatgacgcagcgctggatgaactgcgggtagaaatgatcgaccgcttcgggccg
ctccctgacggcgcaaaaaacctattcgcaatcactcgcttgcaaaagttggcctcgggg
ctgggcattactaaaatagatgcggggccgaaaggtggacgcttggagtttggcccacac
ccgaaagtagatccgcttaccttggtaaaactggtgcagtctatgccgcaaaaattcaaa
ctggaaggcgcagacaagctacgattcatgttagagagtgaaactgcacaggagcgaatt
gagttggtgcgcgagctgttggcgcggatttcacccaaagcttctgcactgaagcaggcc
ggcacctga
DBGET
integrated database retrieval system
