Gamma proteobacterium HdN1: HDN1F_13480
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Entry
HDN1F_13480 CDS
T01300
Name
(GenBank) Hypothetical protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03030
DNA replication
gpb03430
Mismatch repair
gpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDN1F_13480
03430 Mismatch repair
HDN1F_13480
03440 Homologous recombination
HDN1F_13480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpb03032
]
HDN1F_13480
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_13480
Enzymes [BR:
gpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDN1F_13480
DNA replication proteins [BR:
gpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDN1F_13480
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDN1F_13480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DUF3072
Motif
Other DBs
NCBI-ProteinID:
CBL44931
LinkDB
All DBs
Position
complement(1676797..1677699)
Genome browser
AA seq
300 aa
AA seq
DB search
MFAAVKHAQANRNQICLSKLLVHQGIIQEVSVEYLIAIDFETTGLEASSAAITEIGAVKF
KISGEIVDQFEMFAYPGTPIPVRIQELTGITDEMVTGCEPPLFVWKKFLDWADGANTFIA
HNAPFEARFVRALYEKEGEMPNIYFIDTLQISRNRLPEESSYSLKNLVKFKEGEPHRALA
DAKACSTLYCRLASTYRNGKIPVGTYKKSIRDYKDYDEPTGSQLAYIEDLGGDVNSIKTR
QEASRYIDELKAAGQSAHSKQREIPNNHFLQKNFLDYTFRDKVFIVIIIIFALWLIVQYS
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcggcggtcaagcacgctcaagccaatagaaatcaaatttgtttatctaaactg
cttgtgcatcagggtatcattcaggaggtgagcgtggagtaccttatcgctattgatttt
gaaacaacgggacttgaagcatcatccgccgcaatcactgaaattggcgcagtaaaattc
aagataagtggcgaaatcgttgatcagtttgaaatgttcgcctatccaggcacgccaatt
cctgtgcgtatacaagagctaacgggcataaccgatgaaatggtaacaggctgtgagccg
ccgctttttgtttggaaaaaatttttagactgggcggatggagctaatacctttattgcc
cacaacgcaccatttgaagctcgcttcgtgcgtgcattatatgaaaaagaaggcgaaatg
ccgaatatttattttatagatacactacaaataagcagaaacagacttcctgaagaaagc
agctatagcttaaaaaatcttgttaaattcaaagaaggcgagccacacagagcgctggca
gacgcaaaggcatgttcaaccctttattgcagactcgcttcgacgtatcgtaacggaaaa
attccggtaggaacttataaaaaatctatacgcgactacaaggactatgatgagccaaca
ggaagtcagctagcatatatagaagatctcggtggtgacgtaaattctatcaagacaagg
caggaagcaagccgttacattgatgagctgaaggcagcaggacagagtgcgcactcaaaa
cagagagagattcccaacaaccattttcttcaaaaaaattttctcgattacacgttccga
gataaggtgttcatcgtaattattatcattttcgcactctggttgatagtccaatacagc
taa
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