Gamma proteobacterium HdN1: HDN1F_15620
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Entry
HDN1F_15620 CDS
T01300
Symbol
lpdG
Name
(GenBank) 2-oxoglutarate dehydrogenase, lipoamide dehydrogenase subunit
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb00010
Glycolysis / Gluconeogenesis
gpb00020
Citrate cycle (TCA cycle)
gpb00260
Glycine, serine and threonine metabolism
gpb00280
Valine, leucine and isoleucine degradation
gpb00310
Lysine degradation
gpb00380
Tryptophan metabolism
gpb00620
Pyruvate metabolism
gpb00630
Glyoxylate and dicarboxylate metabolism
gpb00640
Propanoate metabolism
gpb00670
One carbon pool by folate
gpb00785
Lipoic acid metabolism
gpb01100
Metabolic pathways
gpb01110
Biosynthesis of secondary metabolites
gpb01120
Microbial metabolism in diverse environments
gpb01200
Carbon metabolism
gpb01210
2-Oxocarboxylic acid metabolism
gpb01240
Biosynthesis of cofactors
Module
gpb_M00009
Citrate cycle (TCA cycle, Krebs cycle)
gpb_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
gpb_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
gpb_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
gpb_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
HDN1F_15620 (lpdG)
00020 Citrate cycle (TCA cycle)
HDN1F_15620 (lpdG)
00620 Pyruvate metabolism
HDN1F_15620 (lpdG)
00630 Glyoxylate and dicarboxylate metabolism
HDN1F_15620 (lpdG)
00640 Propanoate metabolism
HDN1F_15620 (lpdG)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
HDN1F_15620 (lpdG)
00280 Valine, leucine and isoleucine degradation
HDN1F_15620 (lpdG)
00310 Lysine degradation
HDN1F_15620 (lpdG)
00380 Tryptophan metabolism
HDN1F_15620 (lpdG)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
HDN1F_15620 (lpdG)
00670 One carbon pool by folate
HDN1F_15620 (lpdG)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gpb04147
]
HDN1F_15620 (lpdG)
Enzymes [BR:
gpb01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
HDN1F_15620 (lpdG)
Exosome [BR:
gpb04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
HDN1F_15620 (lpdG)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
FAD_oxidored
FAD_binding_2
GIDA
NAD_binding_8
HI0933_like
AlaDh_PNT_C
FAD_binding_3
Thi4
DAO
3HCDH_N
Lycopene_cycl
2-Hacid_dh_C
UDPG_MGDP_dh_N
Motif
Other DBs
NCBI-ProteinID:
CBL45145
UniProt:
E1VK03
LinkDB
All DBs
Position
1988581..1990017
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AA seq
478 aa
AA seq
DB search
MPKVFDVVVIGGGPGGYAAAIKCAQLGLKVACIEKYINKNGKPALGGTCANVGCIPSKAL
LDSSWKYHEAREALAVHGITTGDVKIDVKTMVERKDTVVKKQTDGVAMLLQMNGITWLQG
EGKLLAGKRVEFSPHEGENETLEATYVILASGSSPIKIPVVPLVDGLVVDNAGALDFTEV
PKRLGVIGAGIIGLELGSVWARLGAQVTVLEAQDTFLPIVDRQVSRETFKQLTKQNLDIK
LSARVTGSTVKGNEVEVAYTDANGEQKLTVDKLIVAVGRRPYTEGLLAVDSGVTLDERGF
IFVNGQCRTDVPGVYAIGDLVRGPALAHKATEEGVMVAEMIAGHTIHINYDCIPSVIYTH
PEVAWVGLSEEQAKARGEEYKTGSFSFAANGRAVAANETAGFVKVVADKRTDRILGVHII
GPQASELIMQAVIAIEFCGSVEDLQLMVFAHPGLSEVLHEAMLDVDGKAIHSAKKKRK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagtatttgatgtggtagtgattggcggcggccccggcggctatgcggcggct
attaaatgcgctcagttgggcttgaaagtcgcgtgcatcgaaaaatatatcaataaaaat
gggaagcccgccttgggcggtacctgtgctaacgtgggctgcatcccatcaaaagcgtta
ttggattcgtcttggaaatatcacgaagcacgtgaggcgctggccgtacatggtattacc
acgggcgacgtgaaaattgacgtcaaaaccatggtggagcgcaaagacacagtcgttaaa
aagcaaaccgacggtgttgcgatgctgctacaaatgaacggcatcacctggcttcagggt
gaaggcaaattgttggctggaaagcgcgtagagttttctccacacgaaggcgagaacgaa
acgctggaagcaacctatgtgattcttgcgtccggctcttcgcccatcaagattcccgtt
gttccgctcgtcgatggcttggtggtggataatgccggcgcgctggattttaccgaggtg
ccgaagcgcctaggcgttattggtgcagggatcatcggcttggaattgggctctgtttgg
gcacgtttaggggcccaggtgacggtgcttgaagcgcaggatacgttcctgcccatcgtc
gatcgtcaggtgtctcgcgagacgttcaagcaactgaccaagcagaatctggacattaaa
ctgtctgcgcgtgtgaccggcagcaccgtaaaaggaaatgaggtcgaggtcgcctatacc
gatgccaacggcgagcagaagctgaccgtagacaagctgatcgttgcggtgggccgccgc
ccttataccgaaggtttgctagcggtagatagcggtgtaacgctggatgagcgtggtttt
atctttgtaaacgggcagtgcagaaccgacgttccgggcgtttacgcgattggtgacttg
gtgcgtggccccgcgcttgcgcataaagccacggaagagggtgtgatggtagcagaaatg
attgctggccatactatccatattaactacgactgcattccctcagttatttatactcac
ccagaagttgcgtgggttggacttagcgaagagcaggcgaaagcgcgcggcgaagagtat
aaaacgggcagtttttcattcgcagccaacggtcgagcggtagccgcgaacgaaaccgcc
ggttttgtgaaagtggtggccgacaagcgtacagaccggattcttggggtgcatatcatt
ggcccgcaagcatctgaactgatcatgcaggcggtaattgcaattgagttctgcggcagt
gtagaggatttgcagctcatggtgtttgcgcaccctggcctttccgaagtactgcacgaa
gccatgctggacgtggacggcaaggcgattcattctgccaagaagaagcgcaagtaa
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