Gamma proteobacterium HdN1: HDN1F_16640
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Entry
HDN1F_16640 CDS
T01300
Name
(GenBank) Hypothetical protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
gpb
Gamma proteobacterium HdN1
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
gpb01011
]
HDN1F_16640
Enzymes [BR:
gpb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
HDN1F_16640
Peptidoglycan biosynthesis and degradation proteins [BR:
gpb01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
HDN1F_16640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLT
LysM
Motif
Other DBs
NCBI-ProteinID:
CBL45247
LinkDB
All DBs
Position
complement(2106926..2108290)
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AA seq
454 aa
AA seq
DB search
MDRCKTLLVAACLSTQIAGCVTQVVDQNQVEPPQQTLFSATKNVNSDKLLATLEGAKPGG
KTNKTSNSGGVNESENSIVYQRSKQNAELTITSGKTERIKVAAENDIDFWSDFHSQMSIV
EGLEPATIADQTRWLKRHPNYVRAHLKSGSQLLPYMLSEARKQRIPAELTLIPIIESGFN
PSAVSAAGPTGLWQLTGPTARHLGVRTNAAFDGRKDIIESTQAAFRYLSQLNGQFDGNWL
LSVAAYNCGPAVVDAALRARYGNNRAAWQNLGVDGIQSLRIPALTKQYVARLMAISQVVL
DGTTSDPLPAIDAKSGFEVVEFHYSMPLNRIASEAGISVNELAPYNGGLRHASTHPSAPQ
RLLVGKQVAWKLAAVNWNARRTTTPVYAEGYVYGADHVVRSGDTLSVLAARYGTSVPQLK
KTNNLRSDVLQLGQVLRVPNLKSADANDTRTAKR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggatagatgcaaaacgctgctagtggcggcgtgcctgagcacacaaattgctggatgt
gtgactcaggtagtagatcagaaccaggtcgaaccgccacaacaaactctattctccgct
accaaaaacgtaaattctgacaaactgctcgcgacacttgaaggggccaagccgggagga
aaaacaaacaaaacaagcaattcaggtggcgttaatgagagcgaaaactccatcgtttac
caaagatcaaaacaaaacgctgaacttacaattacatctggaaaaactgaacgcataaag
gttgccgcagaaaacgacatcgatttctggagcgactttcacagccagatgagcattgta
gaagggctggaaccagcaaccattgcagaccaaacgcgatggctaaaacggcatccaaac
tacgttcgtgcgcatctgaaaagtggtagccaactactaccctacatgctgagtgaagcg
cggaagcagcgaatcccagcagagctcacactgatccccatcattgaaagcggctttaat
ccgtctgcagtaagtgctgcgggccctactgggctttggcaacttaccggccccacagcg
cgccacttgggtgttcgcaccaacgctgcgttcgatgggcgcaaagacattattgaatct
acacaagccgcgttccgctacctctctcagctgaacggccaatttgatggcaattggttg
ctttctgttgccgcatacaactgcggccctgcagtcgtagatgctgcgcttcgcgcaaga
tacggcaacaaccgtgcggcttggcaaaacttaggtgtcgatggcattcagagcctccgc
atccccgcactcaccaagcaatacgttgcacgcttgatggcgatttcacaggtcgtttta
gatggcacgaccagcgatccactgcctgcaattgacgcgaaatcaggttttgaagtcgtt
gagttccattactccatgccgctgaaccgaattgccagcgaagcgggtatctcggtgaat
gaactagcgccctacaatggcggattaaggcacgcatccacacacccgagcgctccgcag
cgtttgctcgtgggcaaacaagtagcttggaaacttgctgcagttaactggaacgcccgc
cgcaccaccaccccagtttatgcagagggttatgtgtacggagcagaccatgttgtgcgt
tctggtgataccctaagcgtgctcgcggctcgctacggcaccagcgttccacaacttaag
aaaaccaacaacctacgctccgacgttttacagctaggccaagtgctgcgcgtgcctaac
ctgaaatccgcagacgccaacgatacgcgcactgcgaagcgctaa
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