Gamma proteobacterium HdN1: HDN1F_19280
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Entry
HDN1F_19280 CDS
T01300
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor
KO
K03089
RNA polymerase sigma-32 factor
Organism
gpb
Gamma proteobacterium HdN1
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpb03021
]
HDN1F_19280 (rpoH)
Transcription machinery [BR:
gpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HDN1F_19280 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
CBL45511
UniProt:
E1VL19
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All DBs
Position
2395076..2395933
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AA seq
285 aa
AA seq
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MSKALAPAFVAVPGADLNRYLSAVNSVAILSADEERALAERYYYNEDVDAARQLVLAHLR
FVVHVARGYNGYGLQLSDLVQEGNVGLMKAVKRFDPTMGVRLVSFAVHWIKAEIHEFILR
NWRIVKIATTKSQRKLFFNLRSHKRRLGVLSGDEVNMIATELNVSPEDVREMEGRLAAHD
TAFDAPVDADDESASQAPVYYLEDASMDPAHQLEDAQWTDNTTDRLQLAMNSLDERSRDI
LQQRWFNDDKATLHDLAAQYSVSAERIRQLEANAMKKIKLAMLEA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagctctcgcacctgcatttgtggctgtgccaggcgccgacctcaaccgctac
ctctctgctgtcaacagcgttgcgattttgagtgctgatgaagagagagctcttgctgaa
cgctactattacaacgaagacgtcgatgccgctcggcaactggttttggcgcacctgcgc
tttgtggtgcacgttgcgcgtggctacaacggttatggcttgcagctttctgatttagtg
caagaaggtaatgtgggtttgatgaaagcggtcaagcgtttcgaccctaccatgggtgtg
cgcttggtttcgtttgccgttcactggatcaaggcagaaatccatgagtttattctgcgc
aactggcggatcgtaaagattgccaccacgaagtcgcagcgtaagctgttctttaacctg
cgttcgcacaaaagacgcttgggcgtactgagtggtgacgaagtcaacatgattgctacc
gagttgaacgtaagcccagaagatgtgcgcgagatggaaggccgccttgccgcgcatgat
acggccttcgatgcgccggtagatgcggacgacgagagcgcgagccaagctccggtatac
tacctagaagacgcttcgatggaccccgcgcaccaactggaagatgcgcagtggacggac
aacactaccgatcgcctgcagttggccatgaactcgctggatgagcgtagccgcgacatc
ctgcagcagcgctggtttaacgacgacaaggccacgttgcacgatttggccgcgcaatac
agcgtctctgcagagcggattcgtcaacttgaagcgaacgcaatgaaaaaaatcaagctc
gcgatgttggaggcttga
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