Gamma proteobacterium HdN1: HDN1F_20030
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Entry
HDN1F_20030 CDS
T01300
Symbol
pcnB
Name
(GenBank) Poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDN1F_20030 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpb03019
]
HDN1F_20030 (pcnB)
Enzymes [BR:
gpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HDN1F_20030 (pcnB)
Messenger RNA biogenesis [BR:
gpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HDN1F_20030 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
CBL45586
UniProt:
E1VL94
LinkDB
All DBs
Position
complement(2489587..2490990)
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AA seq
467 aa
AA seq
DB search
MAKRLFSKIKKLFSPKPSSKRGPELVPVSQHGFPASKVSPGARRVLETLTQSGYSAYLVG
GSIRDGLLGISPKDFDVATNATPEQIRQLFRSCRLIGQRFRLAHVRMGREIIEVATFRGH
HHPDDDDDESNSEEAGNQKPRRASVSDEGMILRDNVFGTEHEDAMRRDFTANALFYRLSD
GAIVDHVGGFADIQSRRLRLIGDPDTRFREDPVRILRAIRFAAKLDFAIDETLVKPIRDL
GGLLDHVPAARLFEEIQKMFLSGYAAPVWQKLLEFGLAPQLFPLLVNLSDADHQMIRIAM
QNTDTRIAEEKPVTPAFLLAVLLWPSLKREWERLKEDEDSAAPQFQQAAYRVISAQNHRI
SIPRRFQQPMREIWDLQQRLPRRQGKRADQVLEHPRFRAAYDFLLLREQAGEVPSGLAAW
WERYQAADESTRRQMISELNTGAPRKSRRRRRRPPANASLPPSAPAS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacggcttttttccaaaatcaagaaactgttctcccccaaaccgagcagcaag
cgcgggccagaactagtccccgtcagccaacacgggttccctgctagcaaagtgagccct
ggcgcacgcagagtgctggaaacccttacacaaagcggttacagcgcttatcttgtgggc
ggcagcattcgcgacggcctcctaggcataagccccaaagattttgacgttgcaaccaac
gccacccccgagcaaattcgccagctttttcgtagctgccggctgatcggacagcgcttt
cggctggctcacgttcgcatggggcgggagatcatcgaagttgccacctttcgcggccat
caccatccagatgacgatgacgacgagagcaactcagaagaagccggcaaccaaaaacca
cgccgcgcctcggtttctgatgaagggatgatcctgcgcgataacgtattcggcacggag
cacgaagatgccatgcgccgtgactttaccgccaacgcgctattttatcgcctttctgat
ggcgcgatcgtggatcatgtcggtggctttgcggatattcaatcacgcaggctgcgccta
atcggcgatcctgatactcgctttcgagaagatcctgtacggattttacgagccatccgc
tttgccgcgaagcttgacttcgccatcgacgagacgctcgtaaaaccgattcgagacctc
ggcggcttgctggaccacgttcccgccgcgcgtttgtttgaagaaatccagaaaatgttt
ctctccggatatgctgcgcccgtctggcaaaagctcctggagttcgggcttgcgccgcaa
ttgttcccgctattggtgaacctttcggatgcagatcatcagatgattcgcatcgccatg
caaaacacggacacccgcatcgcggaagaaaaaccggtcacccctgcttttctgcttgcc
gtgctgctttggccgtcgctaaagcgggagtgggagcgcctcaaagaggacgaagactct
gcggctccgcaatttcagcaagctgcctatcgggtaatttccgcgcagaaccaccgtatc
agcatcccccgcaggttccaacagccgatgcgggagatttgggatctgcaacagcggctg
ccacggcggcaaggcaaacgcgcggatcaagtgttggaacacccaagattccgcgccgcc
tatgactttttgctgctgcgcgaacaagcgggtgaagttccctcggggcttgctgcttgg
tgggagcgctaccaagcggccgacgaatccactcgccgccaaatgatcagcgagctaaat
accggcgcgccgcgtaaaagccggcgccgtagacgtcggccaccggcgaatgcttcacta
ccgccctctgcacccgcgtcgtga
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