Gamma proteobacterium HdN1: HDN1F_22530
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Entry
HDN1F_22530 CDS
T01300
Name
(GenBank) Uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HDN1F_22530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_22530
Enzymes [BR:
gpb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
HDN1F_22530
DNA repair and recombination proteins [BR:
gpb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HDN1F_22530
Prokaryotic type
HDN1F_22530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
CBL45836
UniProt:
E1VLZ4
LinkDB
All DBs
Position
2787305..2788069
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AA seq
254 aa
AA seq
DB search
MDRGRWLVTGSQSDFVEATAAASTDASSRIRLEGSWKQFLISEFEQPYMKGLRDFLNAEK
QAGKSIYPRGSEYFQALNSTPFEEVKVVVLGQDPYHGPGQAHGLSFSVLPGTPFPPSLIN
IFKELQTDVGVPVPAHGCLSHWAEQGVLLLNSVLTVEAGKAGSHQGRGWEIFTDRIVREL
ASQREGLVFLLWGSYAHKKGQFIDRKRHLVLSAVHPSPLSAYRGFFGCKHFSQTNAFLLA
HGKKPIDWTVSPRS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
gtggatcgtggtaggtggcttgtgacaggttcgcagagcgattttgtagaggctacagct
gcggcatcaacggatgcatcttctcgaattcgcttggaggggagctggaagcagtttctg
attagcgagtttgagcaaccctatatgaaggggctgcgggattttttgaacgccgaaaag
caggccggaaagagcatttatcctcgcggtagtgagtattttcaggcacttaacagcacg
ccttttgaggaggtcaaagttgtggtgctcggtcaagatccttaccatgggccagggcag
gcgcatggtctctccttctctgttttacctggtacgccattcccgccttcgctgatcaat
attttcaaggagctgcagacggatgtgggagtaccggtgcccgctcacggttgcctgagc
cattgggcggaacaaggcgttttgctgctcaacagcgtgttaaccgtggaagcggggaag
gccggttcacaccaagggcgtggctgggaaatttttaccgaccgtatcgtgcgcgagctg
gcctcacagcgggaaggtttggtgtttctgttgtggggtagttatgcccacaagaagggc
caattcattgatcggaaaagacatcttgttctctctgcggttcatccgtcgccattgtcg
gcctatcgtggcttttttgggtgtaaacatttcagtcaaacaaatgcttttttgctggct
cacggtaagaaaccgattgactggacagtatcgccaagatcatga
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