Gamma proteobacterium HdN1: HDN1F_27540
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Entry
HDN1F_27540 CDS
T01300
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
KO
K03086
RNA polymerase primary sigma factor
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HDN1F_27540 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpb03021
]
HDN1F_27540 (rpoD)
Transcription machinery [BR:
gpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HDN1F_27540 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
CBL46337
LinkDB
All DBs
Position
complement(3393620..3395503)
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AA seq
627 aa
AA seq
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MSDTEQQKSQLKQLIARGKEQGFLTFADVNDHLPPDITDPEQVEDIIAMINDMGIPVHEA
APGAEGLLRGGANPSNEDASDEESPANAVIDAEPGRTTDPVRMYMREMGSVELLTREGEI
VIAKRIEEGIREVMSALAFWPDAVDVVLDEYSKVDSQERRLNDIISGYLDLAECEVEESD
FQANAPAKEATLKDKDLSDDDEEEESEGESGDSSEEEDAGSLDPEEARVRFGALLDALNA
AKTTREEKGRKSKPFTNAQEELANQFITFKLVPRLFEQLVGGVRETLERVRENERAIMTR
CIRIAKMPRKDFVKQFPGNETNIEWVDKIAGGKTAYAERVGALKDDIIKLQQNLLGLEST
LSLSIAEIKEINRRISIGEAKAARAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQM
LQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTMQS
PVDAATAESLREATRDVLASLTAREAKVLAMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSEHLRSFLDGDSTP
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccgagcaacagaagtctcagctaaaacagctgatcgcccgcggtaaggag
caaggcttcctgacgtttgctgatgtcaacgatcacctgccgcccgatattaccgaccca
gaacaggtcgaagatatcattgccatgatcaacgatatgggcattcctgtccatgaggcc
gcccctggagcagaaggtttgctgcgcggtggcgccaacccatccaacgaagacgcgtcg
gatgaagaaagtccagccaacgccgtcatcgacgccgaacccggccgcacgacggaccct
gtgcgcatgtatatgcgagaaatgggctctgttgaactgctgacccgcgaaggcgaaatt
gtcattgccaaacgcatcgaagaagggattcgtgaggtcatgagcgcgctcgctttttgg
ccagatgcggtcgatgtcgtgcttgacgaatatagcaaggttgattcccaagaacgccgc
ctcaacgacatcatcagcggctatctcgacctagcagaatgcgaagtggaggagtccgat
ttccaagccaacgcccccgcgaaggaagccactctcaaggacaaagatctatccgatgac
gatgaggaagaagagtctgaaggtgagtctggcgatagtagcgaagaagaagatgcaggc
agcctagaccccgaagaagctcgtgttcgttttggcgcgcttttggatgcgctgaacgcc
gccaaaacgacccgcgaagaaaagggccgcaaatcaaaacctttcaccaacgcccaagaa
gaactcgccaaccagttcattaccttcaaactggttccgcgcctattcgaacagctggta
ggcggagtgcgtgaaaccttggaacgcgtacgcgaaaacgagcgcgcgatcatgacgcgc
tgcattcgcattgcaaaaatgccgcgcaaggattttgtgaaacagttcccaggcaatgaa
accaacattgagtgggtggacaaaatcgccggagggaaaaccgcttacgctgaacgagtc
ggcgcactcaaagacgacatcatcaagctccagcaaaatctgctagggctcgaaagcacg
ctgtcgctctccatcgcagaaatcaaagaaatcaaccgccgaatttcgattggcgaggcg
aaggcggcccgcgccaagaaagaaatggtagaagccaacctgcgcttggtaatttccatt
gccaaaaagtacaccaaccgtggcctgcagtttctcgacctgattcaagaaggcaacatc
ggcctgatgaaagcggtcgacaagtttgaatatcgtcgcggctacaagttttcgacctat
gcaacttggtggatacgtcaggcgatcacgcgttctattgcggatcaagcgcgcacgatt
cgtattcctgtgcatatgattgaaacgatcaacaagctgaaccgcgtatcacgccaaatg
ctgcaagagatggggcgcgaaccaacgccggaagaacttggtgagcgcatggacatgccg
gaagataaagtgcggaaagtgcttaaaattgccaaagagcccatctccatggagacgccg
atcggcgacgatgaagattcccacttgggggattttatcgaagacactacgatgcaatcg
cctgtcgatgccgccactgccgagagccttcgcgaagccacacgcgatgtacttgcaagc
ctcaccgcacgggaagccaaggtgctggcgatgcgcttcggaattgatatgaataccgat
cacaccctagaggaagttggcaagcagttcgacgtcactcgtgaacgtatccgccagatc
gaagcgaaagcgcttcgcaagctgcgccatccaagccgctcagaacatctgcgcagtttt
ttggatggggatagcacgccgtaa
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