Gamma proteobacterium HdN1: HDN1F_28140
Help
Entry
HDN1F_28140 CDS
T01300
Symbol
groEL
Name
(GenBank) Chaperonin 60 kD subunit
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDN1F_28140 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpb03019
]
HDN1F_28140 (groEL)
03110 Chaperones and folding catalysts [BR:
gpb03110
]
HDN1F_28140 (groEL)
03029 Mitochondrial biogenesis [BR:
gpb03029
]
HDN1F_28140 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gpb04147
]
HDN1F_28140 (groEL)
Enzymes [BR:
gpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
HDN1F_28140 (groEL)
Messenger RNA biogenesis [BR:
gpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
HDN1F_28140 (groEL)
Chaperones and folding catalysts [BR:
gpb03110
]
Heat shock proteins
HSP60 / Chaperonin
HDN1F_28140 (groEL)
Mitochondrial biogenesis [BR:
gpb03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
HDN1F_28140 (groEL)
Exosome [BR:
gpb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HDN1F_28140 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
HDN1F_28140 (groEL)
Exosomal proteins of breast cancer cells
HDN1F_28140 (groEL)
Exosomal proteins of colorectal cancer cells
HDN1F_28140 (groEL)
Exosomal proteins of bladder cancer cells
HDN1F_28140 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF2209
Phage_GP20
Motif
Other DBs
NCBI-ProteinID:
CBL46397
UniProt:
E1VNK5
LinkDB
All DBs
Position
3460601..3462250
Genome browser
AA seq
549 aa
AA seq
DB search
MAAKDVRFGDDARSRMIRGVNVLADAVKVTLGPKGRNVVLERSFGAPLITKDGVSVAKEV
ELKDRFENMGAQMVKEVASKASDDAGDGTTTATVLAQAIINEGLRAVAAGMNPMDLKRGI
DKAVAAVVAKIHTQAIPCTDSKAIAQVGTISANSDEHIGQIIAEAMEKVGKEGVITVEEG
SGLENELDVVEGMQFDRGYLSPYFINNQEKMSVELESPFILLVDKKISNIRDMLPILEQV
AKSSKPLLIIAEDVEGEALATLVVNNMRGILKVAAVKAPGFGDRRKAMLQDIAILTGGTV
ISEEVGLSLEGASLNDLGTAKRVSINKENSTIIDGAGQQAEIEGRVKQIRQQIEEATSDY
DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALL
RALSKIDAVAGDNEDQNAGIALALRAMEAPIRQITSNAGEEASVIVDRVKKGEGNFGYNA
ANGKFGDMMEMGILDPAKVTRTALQAAASIAGLMITTEAMIAEKPDDKPAMPAGGGMDGM
GGMGGMGMM
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagacgtacgttttggtgatgacgcccgctcacgcatgatacgcggcgtt
aacgttctcgccgatgcagtaaaagtaacgctggggcccaaaggccgcaacgtagttctg
gaaagatcctttggtgcacctctgatcaccaaagatggtgtgtccgttgctaaagaagtc
gagctgaaagatcgcttcgaaaacatgggcgcgcaaatggtcaaagaagttgcctccaag
gcgtctgatgacgcaggcgacggcacgacgaccgcaaccgtattggcacaagccatcatc
aacgaaggcctgcgtgccgttgctgccggcatgaacccgatggatctcaagcgcggtatc
gacaaagccgtggcagccgttgttgccaaaattcacacccaagccattccctgcaccgat
tccaaggcgattgcgcaagtaggcacgatctctgccaactctgatgagcatattggccaa
atcatcgccgaagcgatggaaaaagtaggcaaagaaggcgtgatcaccgttgaagaaggc
agcggcctcgaaaacgaactggatgtcgtagaaggcatgcagtttgatcgtggctacctc
tccccctacttcatcaacaaccaagagaagatgagcgtagagctggaaagccctttcatc
ctgctggtggacaagaaaatctccaacatccgcgacatgctgccgatccttgagcaagta
gccaagtccagcaaaccgctgctaatcattgcagaagacgttgaaggtgaagcgctggct
accctcgtagtcaacaacatgcgtggcatcctgaaagttgctgctgtcaaggcgccaggc
tttggcgatcgccgtaaagctatgctgcaagacatcgcgattctcaccggcggcactgtg
atttcagaagaagtcggcctgagccttgaaggcgcaagcttgaacgatctgggcactgcc
aagcgcgtttcgatcaacaaagaaaacagcaccatcatcgacggcgctggccaacaggca
gaaatcgaaggccgcgtgaagcaaattcgtcaacagatcgaagaagctacctccgattac
gaccgcgaaaaactccaagagcgcgttgcaaaactcgctggcggcgtagctgtaatcaaa
gtaggcgcagctaccgaagttgaaatgaaagagaagaaagcccgcgttgaagacgccctg
cacgcaactcgcgccgcagttgaagaaggcgtggttgcaggcggcggcgttgctctgctg
cgcgcactctccaaaatcgacgcagtcgctggcgacaacgaagatcaaaacgctggtatc
gcactcgcgctgcgcgccatggaagcaccgatccgccaaatcaccagcaacgccggtgaa
gaagcttctgtgatcgtagatcgcgtcaagaaaggtgaaggcaacttcggctacaacgca
gccaacggcaagttcggcgacatgatggaaatgggcatccttgacccagccaaagtgacc
cgcacagcactgcaagctgccgcatctattgcgggcctgatgatcaccactgaagccatg
atcgctgaaaagccagacgacaagcctgcaatgccagccggtggcggcatggatggcatg
ggcggtatgggcggcatgggcatgatgtaa
DBGET
integrated database retrieval system
