Gamma proteobacterium HdN1: HDN1F_28350
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Entry
HDN1F_28350 CDS
T01300
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03030
DNA replication
gpb03430
Mismatch repair
gpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDN1F_28350 (dnaE)
03430 Mismatch repair
HDN1F_28350 (dnaE)
03440 Homologous recombination
HDN1F_28350 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpb03032
]
HDN1F_28350 (dnaE)
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_28350 (dnaE)
Enzymes [BR:
gpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDN1F_28350 (dnaE)
DNA replication proteins [BR:
gpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDN1F_28350 (dnaE)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDN1F_28350 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Bac_A_amyl_C
Motif
Other DBs
NCBI-ProteinID:
CBL46418
LinkDB
All DBs
Position
3486737..3490258
Genome browser
AA seq
1173 aa
AA seq
DB search
MNMPVEAETVPAIHAATSAPTFVHLRLHTEYSLVDGLVRVKKLVEKAAELGMPAVAVTDY
SGLYGLVKFQKYGLPAGVKPIYGADIWLANLDVEGSPSLITLLAMDVQGYRNITKLVSEA
FLTGQRNGKAIVSRELLHQFADGIICLSGGRQGELGQALLQERPDRAEQIAREMAALYPD
RFYLEVQRTERAGDETYLHLAVALADRFALPVVATNDVRFLKRSDYEAHEVRVCINAGWT
LDDPRREMNYSDQQYLKSPQEMVALFADLPEALENTVEIAKRCNVEIPLGTYFLPDYPVP
EGMTIDSYLVHQAEEGLNARLAFLYDITRPDFAEIRARYDERLRIELDCIIKMGFPGYFL
IVADFIQWAKNNGVPVGPGRGSGAGSLVAYAIKITDLDPLEYDLLFERFLNPERISMPDF
DVDFCMEGRDRVIDYVAEKYGRDAVSQIITFGSMAAKAVVRDVGRVQGKSYGFVDRIAKL
IPFELGMTLEKAMEQEPQLKELYNADEEVHDLLDMALKLEGICRGVGKHAGGVVIAPSAL
TNYVPLYCDETGHNLVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALGIINPRLQRKGEA
AVDIARIRLDDPATFRLLQSAETTAVFQLESRGMKDLIKRLKPSVFEDIIALVALFRPGP
LGSGMVDDFIARKHGKQAVTYPHPDLKPVLDTTYGTILYQEQVMLIPQVLAGYSLGGADI
LRRAMGKKKADEMAKQRSIFTDGCAKNQIDEKLAGEIFDTMEEFAKYGFNKSHSAAYALV
SYQTAWLKAHYPAGFMSAVLSADMHNTDKIVIFIDECRRMGLQIVSPHVNTSAYKFDVND
ANHIVYGLGAIKGLGAGPIEAIIEARDAGAPFTDLFEFCRRVDMKKLNRRVLEALIRSGA
MDGMGPDRAIMLASLDEAAKAAGQAAESADAGMMDLFGELGGAEEFTPAWSVAKPASPDE
LLQGEKDTLGLYLTGHPIDQFEEELSHFISSKICDVKPSQSRDQKSIIAGLVIAVRTMKN
KRGDRMGFLTLDDKSGRMEVSLFSDVFEQYRELLTKDVVLVAEGDVSMDDFSGGLKMVVR
KLFSIGQARESFARLITLRLNASTIGPSTLNDLRTMLEPFRRQGDCRVRIEYQMADARGS
VLLGDDWKVAPKQALLKEIGASFGDRALVVQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgccggtagaggcggagactgtgcccgcgatacacgctgcaaccagtgcgcct
acctttgtgcatctgcgtttgcacacggagtattcgctggtggatggcttggtcagagtc
aaaaaactggtggagaaggctgcagagcttggaatgccggcggttgccgtcaccgactat
tccggtttgtatggcctagtaaagtttcagaagtacggcctaccggcgggtgtgaagccc
atttacggcgcagatatctggttggcgaaccttgatgtcgaaggctcgccgtctttgatt
accttgcttgcgatggatgtgcagggatatcgcaatatcaccaagctggtttcggaggcg
tttctaacagggcagcgtaatggcaaagccatcgtaagccgtgagctgcttcatcagttt
gcggatggaattatttgcctgtcaggtggccgccaaggtgaactcggccaagcactgcta
caagagcgccccgatcgtgcagaacagattgcgcgtgagatggcggctttatacccagat
cgtttttaccttgaagtgcagcgtacagagcgcgcgggggatgaaacctacttgcactta
gcagtcgcgttagcggatcggttcgcgttgcctgtggttgctacgaatgacgtacgcttt
ttgaagcgcagcgactacgaggcgcatgaggtaagggtatgcattaacgccggttggacg
ctggacgacccgcgtcgcgaaatgaattatagcgatcagcaatacctaaagagcccccaa
gagatggtggcacttttcgctgatttacccgaagcacttgaaaacaccgtagaaatcgcc
aaacgctgtaacgtagagattcctctgggcacttattttctgcccgactatccagttcct
gaaggcatgacgattgactcttatctcgttcatcaagctgaggaggggttgaatgcccgt
ttggcgtttctttacgatattacacgccctgatttcgcggaaattcgcgcccgctacgat
gagcgtttgcggattgagctggactgtatcattaagatgggctttccaggctactttctg
atcgttgccgattttattcaatgggccaagaataacggtgttcctgtggggcctgggcgc
ggttcaggggcgggttctttggttgcttatgcaattaaaattactgatttggacccgcta
gagtacgacttgctgttcgagcgctttctgaacccagaacgtatttccatgcctgacttt
gacgtcgatttttgcatggaagggcgtgatcgagtcattgactatgtcgcagaaaaatat
gggcgagacgcggtttcccagatcattacctttggttcgatggcggcgaaagcggtggtg
cgtgacgtcggacgcgtgcagggcaaatcctacggttttgtggatcgtatcgccaagcta
attccatttgaacttggaatgacgctagaaaaagcgatggagcaggaaccgcagctgaaa
gagctttataacgccgatgaggaggttcatgaccttctggatatggcgctcaagcttgaa
gggatttgccgcggtgttggtaagcatgctggtggtgtagtgatcgcgccctctgctctg
acgaattatgtgccgctgtattgcgatgaaaccggccacaacctggtcacacagtatgac
aaagacgacgtcgaacaggcgggcttggttaagttcgactttcttggtttgcgcacgctg
accattatcgactgggcgctaggcatcattaaccctcgcttgcagcgtaagggcgaggcg
gcagtagatattgcccgtatccggctagacgaccccgccaccttccgtctgttgcagtcc
gcagaaaccaccgcagtattccagctggaatcgcgcggtatgaaagatctgatcaagcgc
ctgaagcccagcgtttttgaagatatcattgcactggtagcactgtttcggccgggcccg
ctggggtctgggatggtggacgactttattgcgcgtaaacacggcaagcaggcggtgacc
tatcctcaccctgacttgaaacccgtgttggataccacctacggcacgattctctatcaa
gagcaggtaatgctgattccgcaggtactagcgggatattcgctgggcggcgcggatatt
ttgcgccgcgcgatgggtaaaaagaaagccgacgaaatggccaagcagcgcagcattttt
acggatggttgtgcgaagaatcagattgatgaaaagcttgccggtgaaattttcgatacg
atggaggagtttgccaaatacggctttaacaagtcgcactccgccgcgtatgccttggtc
tcctatcaaacggcgtggctaaaagcgcattatcctgctgggtttatgtctgccgtttta
tctgcggatatgcacaataccgataaaatcgttatttttattgatgaatgccggcgaatg
gggctgcaaattgtttccccccatgtcaacaccagtgcctacaaatttgatgtgaatgac
gccaaccatatcgtgtacgggttgggtgcaatcaagggcttgggggcagggccgattgaa
gccattattgaagcacgcgatgcaggggcaccgtttaccgacctgtttgagttttgccgt
cgcgtagatatgaaaaaactgaatcggcgcgtactggaggcgctgatacgcagcggtgca
atggatggcatgggccccgatcgcgccattatgcttgcgagcctagacgaggcagcgaag
gcagccggccaagccgcagagagtgccgatgcagggatgatggatctgtttggtgaactg
ggtggagcggaggaatttactcctgcttggagtgtggcaaagcccgcaagccccgatgaa
ttattgcagggcgaaaaagacacgctagggctttacctcactggacatccgattgatcag
tttgaagaagagcttagccactttataagcagcaaaatatgtgacgtaaagccgagccaa
agtcgcgatcaaaaaagcattatcgcaggtttggtaattgccgtgcgcacgatgaaaaac
aagcgcggcgatcgcatgggattcctaacgctggatgacaagagcggccgtatggaagtg
tcgctgttttcggacgtgtttgagcagtaccgcgagcttctgaccaaagacgtagtgctg
gtcgcagagggtgatgtcagtatggacgactttagcggcgggctcaaaatggtggttcgg
aagctgtttagtattgggcaagcgcgtgagagtttcgcgcgtctcattacgctccggctt
aacgcatctacgatcgggccgagcaccttgaacgacttgagaaccatgctggagccgttt
cgccggcaaggggattgccgagttcgcattgagtatcagatggcggatgctcgcggttcc
gtattgctgggcgatgactggaaggttgcgcccaagcaggcgcttctcaaggaaattggc
gcaagttttggtgatcgggcgcttgtggttcaataccgctaa
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