Gamma proteobacterium HdN1: HDN1F_28730
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Entry
HDN1F_28730 CDS
T01300
Symbol
recB
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V) beta-subunit (contains helicaseand exonuclease domains)
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HDN1F_28730 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_28730 (recB)
Enzymes [BR:
gpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HDN1F_28730 (recB)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HDN1F_28730 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_30
AAA_11
CMD
ResIII
Motif
Other DBs
NCBI-ProteinID:
CBL46456
LinkDB
All DBs
Position
3535540..3539358
Genome browser
AA seq
1272 aa
AA seq
DB search
MTQNETIAPEVLPLALRLPLQGVRLIEASAGTGKTFTIAALYLRLILGHQSTLGRPLTPR
DILVVTFTQAAAEELRGRIRARLYEGAQAMRGVELPSESILCALYQEYEAQGMRERAGYL
LQQAAENMDEAAIYTIHAWCQQVLQQHAFASGASFGKTLQQDEKVLLEVCVRDYWRSFFY
SQGEYQAAWLFAQWKTPEALLEALKKPLELADSNLALPSQRKLDLAVGSLMKLRVQIANG
GDDIAGYVEEALKSGALNKKTYKEAALYENLLLLLEWARSPENTPSVGPSEIGKLLKFWS
YNELKRKTNKGKAACPPDVLKYIDEHLEKKSDDEIKHDYLLHAVNWVRKRMVHEKAQRSA
MYFDDLINDVESALTAPNGSSLATLLRDRFPVAMIDEFQDTDQTQYSSFRAIYADSSDQD
RYDQDSSDQDSSKQDSSRQDNRQCALLLIGDPKQAIYSFRGADIFTYLQARKDTHGKHYT
LDTNYRSVDTLIRGVNALFSMNLRQLKGEAFIFSDIPFLPVNSAPAKSSFVWNDKEIADL
CFWTYDAASPEEVFTKGEYQMQLAAKTANTIVELLQASQCGRAYFRSQDGKETPLKAADI
AILVRSRGEASVMRDALELANVRSVYLSQRDSVFASAEANTLLVWMDAVAQPENERLLRA
ALATPHLYRSDANLDDLLRDEIAWEETLEFFKQLRADWLKHGVLPMVRRLMQRYDVANHL
LHERKERVLTNFLHLSEWLQTAAASLDGEHALIRLLRDKIRSAKLGQDTEENVLRLESDE
QLLKIITIHKSKGLEYPLVFLPFASNAGHPDDAPFAWHDAQDQRRVLWNYDPEKLKEKAT
EAFLREKLAEDLRLFYVAVTRARHACWVGAAPVGKKPTKDKSECLLENNVLAWLLAGKQS
LTLAEYQQALKHFSGTSNPIVLQATQFLDLEDASSRQIFHSGEQVCALQEVRQAQKREAQ
GWIITSYTGIVWGKTSISSSADSAKEGNVQEESHLQENVQNSTPSGEAEIAQAPPRDIHS
FPAGAAPGTFLHSLLEWAGNYGFRRLIEDAKDQDKAASLMEQFQSQCERYQYIEWQEVLW
PWMIAFLQTPLNQPSEPFSISTLSRLQYQVEMEFLLSLSAFHQQTLDRMICESEYPGIAR
PQLMRRQVEGMLKGFIDLVCEHAGRYYVVDYKSNYLGADRSAYTPAAMQKAILEHRYDVQ
YVLYTIALHRLLKIRLGENYDYDRHIGGAIYLFLRGVDAEGNGIFVRRIPYETLLSLEKM
FWGETACTNLTG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagaatgaaacgattgctccagaagttttgcccttagccttacgcttgccgtta
caaggtgttcgtctgattgaagcaagtgcgggtacgggaaaaaccttcaccattgccgcg
ctttatttgcgcctgatccttggccatcaaagcacactgggaaggccgctcacccctcgt
gatattttggtggtgacgtttacgcaagctgccgcagaggaattacgtggcagaattcgc
gcccgcttatatgaaggtgcacaagcgatgcgtggcgtcgaattgccttcggagagcatt
ctttgcgcgctatatcaagaatatgaagcgcagggaatgcgagagcgggcgggctatctg
ctgcaacaagcagcggagaatatggatgaggcggcaatttataccattcacgcatggtgt
cagcaggtgttgcagcagcatgcatttgcgagcggcgcaagctttgggaaaaccttgcaa
caggacgagaaggttttgttggaagtttgcgtaagggattattggcgcagttttttttac
tcccaaggggaatatcaggccgcgtggctttttgcacagtggaaaacgccagaagcctta
ctggaggcgttaaaaaaaccattggaactggccgattcgaaccttgctttgcccagccag
cgcaagcttgatcttgcggtaggttcattgatgaagttgcgtgtgcagattgcgaatggt
ggcgatgacattgcaggctacgttgaggaagcgctgaaaagtggcgcgctcaacaagaaa
acctacaaggaagctgcgctttatgagaatttactgctgctcttggaatgggctcgttcg
cctgaaaatacgccaagtgtaggcccaagcgaaattggcaaattgctcaagttttggtct
tacaatgaactcaaaagaaagacaaataaaggcaaggcagcttgccctcctgatgttctg
aaatacattgatgagcacctagaaaaaaaatcggacgatgagattaagcacgactacttg
ctacatgcggtgaactgggttcgcaagagaatggtgcatgagaaagcgcagcgctctgca
atgtacttcgatgatctgattaacgatgtcgagagcgcgctaaccgcaccgaatgggagt
agtttggcaacattgttgcgtgatcgatttccagtagcaatgattgatgagttccaagac
actgaccaaacccagtattcttccttccgcgccatttatgcggatagctccgatcaagat
cgctacgatcaagatagctccgatcaagatagctccaagcaagatagctctcggcaggac
aaccggcagtgcgccttgctattgattggtgatccaaagcaggcaatctacagttttcgc
ggggcggatatttttacctacctacaagctcgaaaagacactcatggaaaacattataca
ttagacacaaattaccgctcagtagacacattaatacgtggagtgaacgccttatttagc
atgaatttgcgccagctaaagggggaagcgtttatcttttccgacatcccgtttttgccg
gtgaattccgccccggccaaatcgagttttgtctggaacgacaaagagatcgctgatcta
tgcttctggacttacgatgccgcgagcccagaagaggtgttcacaaaaggtgaatatcaa
atgcagctggccgcaaaaactgcgaacacgattgttgaattattgcaggcttcgcagtgt
ggtcgggcttattttcgcagtcaggatggcaaggaaacacccctgaaggcggcggatatc
gcaattttagtgcgcagccgaggcgaagcgagcgtgatgcgcgatgcgcttgaattggcc
aatgttcgcagcgtctatttaagccagcgcgatagcgtatttgcgagcgcggaggcaaac
acgctgctggtttggatggacgccgtcgctcagccagaaaatgaacgcctactgcgcgct
gcgctggcaaccccgcatttatatcgaagcgatgcgaacttggacgatctgcttcgtgat
gaaatcgcgtgggaagaaacgctggagtttttcaaacagttgcgagctgattggctgaag
cacggggtcttgccgatggtgcgacgcttgatgcagcgctacgatgtcgcaaatcacttg
ctgcacgagcgaaaagagcgtgttttaactaattttctgcatctttccgaatggctacaa
acagcggcagcctcgcttgacggcgaacatgcgctgatccgtttgctgcgcgataaaatt
cgtagtgcgaagctcggccaagataccgaagaaaacgtgctgcgtttagaaagcgatgaa
cagttgctcaagattattaccattcacaaaagcaagggattggaatatccgctggttttc
ttaccctttgcaagcaatgccggtcaccctgacgatgcgccatttgcgtggcatgacgcg
caggatcagcggcgtgtgttatggaactacgatccagaaaaactcaaagaaaaagcaacg
gaagcttttttacgcgaaaaattagcggaagatctgcgtttgttttatgtcgcggtaacg
cgagcgcgccatgcgtgttgggtgggcgcggcgcccgttggaaaaaagcctacgaaggat
aagtcggagtgccttttggaaaacaacgtgcttgcgtggcttttggcgggaaaacagagc
ctcactttagcagaataccaacaggcgctaaaacatttttcgggcaccagcaacccgatt
gttctacaggcgactcagttcttagatttggaagacgcgagcagtcggcagatctttcat
tccggtgaacaggtttgcgcgctgcaggaagtacgtcaggcccaaaagagggaggcgcaa
ggctggattattaccagctatactggaattgtttggggcaaaacctcgatttcttctagt
gcagactcggcgaaggaaggaaatgtacaagaggaaagtcatctgcaagaaaatgtccaa
aattctacgccctcgggggaagcggaaatcgcccaagcgccgccaagagacatccactct
ttcccagcaggtgcggcaccaggtacctttttgcactcgctattggaatgggcgggaaat
tatggatttaggcggctgattgaagatgctaaagatcaagacaaagccgcttccttaatg
gaacagtttcaatcacagtgcgagcgttatcagtatatcgaatggcaagaggtgttgtgg
ccgtggatgatcgcctttcttcagactccgctgaatcagccctcggaaccattttcgatt
agcacgctttcgcgcttacagtatcaggtggaaatggagtttttactatccctgtctgcc
tttcaccagcaaacgctggatcgcatgatctgcgaaagtgagtacccaggaatcgcaagg
ccgcagttaatgagaaggcaggttgagggaatgctcaaaggatttattgatttagtttgc
gagcatgctggccgctattacgtggtagattacaagtcgaattatttaggcgcagaccgt
tcggcctataccccagcggcgatgcaaaaggcgattttagaacatcgctacgatgttcag
tatgtgctgtatacgattgcattgcaccgccttcttaagatacgcctcggcgaaaactac
gattacgatcgccatattggcggcgcgatttacttgtttctacgcggcgtagacgcagag
gggaacggtatatttgtgcgccgcattccttatgaaacgctgctttcgcttgagaaaatg
ttttggggggaaacggcatgcaccaatctaacggggtga
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