Gamma proteobacterium HdN1: HDN1F_28740
Help
Entry
HDN1F_28740 CDS
T01300
Symbol
recD
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V), alpha-subunit-helicasesuperfamily I member
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HDN1F_28740 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_28740 (recD)
Enzymes [BR:
gpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HDN1F_28740 (recD)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HDN1F_28740 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
AAA_22
Helicase_RecD
UvrD-helicase
PhoH
SLFN-g3_helicase
AAA_12
nSTAND3
T2SSE
AAA_28
AAA_16
NTPase_1
Mg_chelatase
UvrD_C
CbiA
TrwB_AAD_bind
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
CBL46457
UniProt:
E1VNR5
LinkDB
All DBs
Position
3539358..3541319
Genome browser
AA seq
653 aa
AA seq
DB search
MPSNEMGDLEGAALPRELLSRELLPRELFGWQLDGWLRPVDIGLAQLLVELGHEKDADVL
IASALVSYHLGCGHVCMDLDALLHSPEAFLPNQRGLKHPWRVQIARWQQIGVNALCERLR
ASDVVGEGEGAEPLVLDKNRLYLRRYWHYETLVASGVRDRMSAPRPIQDLKESLARLFPE
ATEIPDWQQVAVAMASAHSFAVISGGPGTGKTTTVVRLLSLLQEQAIAKEGGRPLRIALA
APTGKAAARLTESISGTKSKLSNAALIPDQVSTLHRLLGIRTDGGRPRYYRGKLLHVDVL
VIDEASMVDLEMMAAVMAALPAKAQLILLGDKDQLASVEAGAILGEICKNAHLARYSEAA
CGELLQSAGVALTPVSDAIVLDDHIVTLKKSYRFQGAIGALASAMNESNAPKMFEILNSG
DSAVQFRNTSQLHKTLAELVLDPASGYALYLRTLQQGCPTGQDMNAWAKTLLEQLSTFQI
LCALRKGPAGVDAVNEAVVSMLKSHSLISQNTGWYAGRPVMVTRNDYSTGLMNGDVGIAL
PEPTSENASPESPPVLRVYFAQPDGIRRVLPSRLTQAETVFAMTVHKSQGSEFKHTCLVL
PESSGAGLTRELVYTAVTRAKERVTIVGSDAQVLARAIQQRVVRCSGLAERLA
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgccctccaatgaaatgggagatcttgagggtgcggcgctccccagagagttactgtcc
agagagctactccctagagagttatttggttggcaattggatggttggctgcgccctgtg
gatatcgggctcgcccaattgttggtggagcttggccatgagaaagatgcggatgtactt
attgcgtcggctttggtgagttatcacctagggtgtggccatgtttgtatggatttggac
gccttgctccattcaccagaagcctttcttccaaaccagcgtggcttaaagcatccttgg
cgcgtgcagatcgcacgctggcaacagatcggcgtgaatgcgctttgcgagcgtttgcga
gcgagcgatgtagtgggggaaggagagggggcagagcctttggtgctggacaaaaatcgc
ctctacctccgacgttattggcactatgagactctggttgctagcggcgtacgggatcgc
atgagtgccccgcgacccattcaggatttgaaggaaagcctcgcgcgcctttttccagaa
gcgacagaaatacccgattggcaacaggtggcggttgcaatggcgtccgcacactcattt
gcggtgatttccggcggtcccggtactggaaaaaccactaccgttgtgcgcctgctgtca
ctccttcaggagcaggcgattgcgaaagagggcggccgccccctacgaattgcgttagca
gcgcccacaggaaaggccgctgcgcggttaacagaatccatcagtggcacgaaatccaaa
ttatcgaatgccgcgctgattcccgaccaggtgtccaccttgcaccgcctcttgggaatc
cgcaccgacggtggcaggccgcgttattaccgaggaaagctgctgcatgttgatgtgctg
gtcattgatgaagcatccatggtcgatcttgaaatgatggccgcagtaatggccgcgctg
cctgcgaaggcgcagctcatccttttgggcgacaaagaccaattggcctcagtagaagcc
ggggccattcttggcgaaatctgtaaaaacgctcacttggcgcgttacagcgaggcagct
tgcggcgagttgttacagagtgcaggcgtcgcacttacgcctgtaagtgatgccatagtt
ctggatgatcatatcgttacgctaaaaaagagctaccgctttcaaggcgcgatcggcgcg
ctggcaagcgcaatgaatgaatccaatgcgccaaaaatgttcgagattctcaattcggga
gattctgcggttcagttccgaaacacctcgcagctccataaaaccctagcggagctcgtg
ctcgatccggctagcggctatgcgctgtacctgcgaaccttgcaacaagggtgccccaca
gggcaagacatgaacgcatgggcgaaaaccctgctagagcaactgtctactttccagatt
ctatgtgctctccgcaaaggcccagcgggagtggatgccgtaaatgaggcagtggtaagc
atgttaaaatcgcattcgttgatttcccagaatacgggctggtatgcagggcggcctgtg
atggtgactcgtaacgactatagtactgggcttatgaacggtgacgttggcattgctctg
ccggagccgacctctgaaaacgccagcccagagagccctccagttttgcgagtctatttt
gcccagcccgacggcattcggcgtgtgttgcctagtcgtttaacgcaagcggaaaccgtg
tttgcgatgaccgtgcataaatcgcaggggtcagagttcaaacatacctgtttagtgctg
ccagagagcagcggcgccgggctgacgagggagttggtttataccgccgtcacgcgagcg
aaagagcgcgtaaccatcgttggaagtgatgcacaagtgttggcgcgcgcgattcaacaa
cgcgtggtgcgctgttctgggcttgcggagcggcttgcctag
DBGET
integrated database retrieval system
