Gamma proteobacterium HdN1: HDN1F_32010
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Entry
HDN1F_32010 CDS
T01300
Name
(GenBank) Conserved hypothetical protein
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
gpb
Gamma proteobacterium HdN1
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gpb03009
]
HDN1F_32010
Enzymes [BR:
gpb01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HDN1F_32010
Ribosome biogenesis [BR:
gpb03009
]
Prokaryotic type
ribosomal protein modification factors
HDN1F_32010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
CBL46784
UniProt:
E1VPP2
LinkDB
All DBs
Position
complement(3905375..3906721)
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AA seq
448 aa
AA seq
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MTASNDETIQSTQKVGFISLGCPKALVDSERILTQLRIDGYEIVPTYENADIVVVNTCGF
IDAAKQESLDAIGEALTENGRVIVTGCMGADAAKIREVHPKVLAVTGPQAYEEVVSAVHQ
YVPTQLGHNPFIDLIPPTGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV
MGEAKRLVDAGTQELLIISQDTSAYGVDLKYRTGFWDGRPVKTKLTDLCEALGELGVWVR
LHYVYPYPHVDHIIPMMAEGKILPYLDIPFQHGSPRILQLMKRPGDIDNTLSRIHQWRNI
CPDLTLRSTFIVGFPGETEGDFQQLLDFIEEAQLDRVGAFAYSPVEGATANALPDPVPEE
LKQERLARFMEVQARISADKLQKKIGKRIEVLIDEVDEEGAVGRSHADAPEIDGMVFLNG
DTELKPGQKVMATVFAADEHDLWADRDE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcaagcaacgacgaaaccattcaatccacccaaaaagtgggctttatcagccta
ggctgcccaaaggccttggtagattccgaacgcattctcacccaactgcgtattgatggc
tatgaaatcgtacccacctacgaaaacgccgacattgtggtggtcaacacctgcggtttt
atcgacgccgccaagcaggaatcgctagatgccattggcgaggcgcttacggaaaatggt
cgcgtgatcgtgaccggctgtatgggcgcagatgccgcaaaaatccgcgaggtacacccc
aaagtactagcggttaccggcccacaagcctatgaggaagtcgtatcggctgtacaccag
tacgttcctactcagctagggcacaacccgtttatcgacctgatcccgcctaccggaatc
aagctcacgccgcgccactacgcatacctgaaaatctccgaaggctgcaaccaccgctgc
acgttttgcatcattccttcgatgcgcggcgatctggtgagccgccccattggcgatgtg
atgggcgaagccaagcgccttgtggatgccggcacgcaagagttactgattatttcgcaa
gataccagcgcctatggagtagacctgaaataccgcaccggtttttgggatggccgccca
gtgaaaaccaagctcaccgacctttgcgaggcgctgggcgaactcggcgtatgggtgcgc
ctacactatgtttacccctaccctcatgtggaccatatcattcccatgatggcggaagga
aaaattctgccctatctggatattcccttccagcacggcagcccgcgtattctgcaactg
atgaaacgccctggggatattgacaataccctgtcgcggattcaccagtggcgcaatatc
tgccccgacctcaccttgcgtagcacctttattgtcggttttcccggtgagactgaggga
gatttccagcaattgctcgactttattgaagaagcccaactggatcgcgtcggcgcattt
gcctactcccccgtggaaggcgcaaccgccaacgcattgcccgatcccgttcctgaggag
ctcaagcaagaacgcttggcgcgctttatggaggtacaagcccgtatcagcgctgacaaa
ttgcaaaagaaaattggcaagcgcatcgaagtgctcatcgacgaagtagacgaagaaggt
gccgttggtcgcagtcatgcagacgcccccgaaattgacggcatggtgttcctgaacgga
gacacggagctgaagcccggccagaaagtaatggccaccgttttcgctgccgacgaacac
gatctctgggccgaccgcgacgagtaa
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