Gamma proteobacterium HdN1: HDN1F_33190
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Entry
HDN1F_33190 CDS
T01300
Symbol
rne
Name
(GenBank) Ribonuclease E (RNase E)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDN1F_33190 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpb03019
]
HDN1F_33190 (rne)
03009 Ribosome biogenesis [BR:
gpb03009
]
HDN1F_33190 (rne)
Enzymes [BR:
gpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HDN1F_33190 (rne)
Messenger RNA biogenesis [BR:
gpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HDN1F_33190 (rne)
Ribosome biogenesis [BR:
gpb03009
]
Prokaryotic type
rRNA processing factors
HDN1F_33190 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CBL46902
LinkDB
All DBs
Position
complement(4038783..4041830)
Genome browser
AA seq
1015 aa
AA seq
DB search
MKRMLINATHPEEFRVALVDGQKLYDLDIEHRTREQKKANIYKGRITRLEPSLEAAFVDF
GADRHGFLPLKEISRDYFVRNPKDIQGRYTVKDVLKEGQEVVVQVGKEERGTKGAALSTF
ISLAGRYLVLMPNNPRAGGISRRIDGDERSDLKEIMNALTIPEDMGMIIRTAGMGRSAEE
LQWDLDYLLQLWASITTASTQRQAPFLIYQESNVIIRTIRDYLRQDIGEVIIDTPEVHKD
ALGFVRQVMPQYESKIKLYKDTVPLFNRYQIESQIEAAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGADIEETALNTNLEAAEEIARQLRLRDIGGLIVIDFIDMNQQKNQREVE
HRLKEALDIDRARIQTGRISRFGLMELSRQRLRPSLGETSGHVCPRCNGTGYVRDLHSLA
LSIMRLIEEEAMKENTAEIHAQVPVNVATYLLNEKRDNIARQEKQNNARILVIPNPNLES
PHFEVTRFRADQITQTTPTASYELISEIEEEEEEIVSFGIENTIKRQEAAVQMIKPTTPA
PQPTAAVTNNDEVVVPNPPKEAGFFARLFAWFLHLFGAGKPAEPEVPETPPAKEEAQPQQ
RSSGNRNRRDNRNRRDNRDNRDNRDNRDNRDNRDNRDRNAGDQRQQAKSQNRDERVEANG
NVAPNAPDASDDSGEQQSNRQDSRGDRQGNQGRNNRRQDRGGRNRDRARNERQDAETATD
SGERSEANSDSQAARQNQPRRDRNERPDRQGHSQERNQERGQERNQERNQERNQGRSQER
NQEAGQSSDRQGESAENANVRHGKRRNPSDTRKRRQNTLQAAERAALPAEETGLEVGVTQ
AENAGQNAAIEEVTAATAVAMAVATTSVAVAEPTATHEAPPAAIAPIAVAMTPEPFVASA
PPRAAVSTIAPETTEAPRIQGETVAVAATSSSEADQPRETDQPRETDRKPDSSTQVAALD
PTPIAIEAPSAASTEEAPSRASNDPREARRRRKAEEEAAKAAAEASESNDAAAVP
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaatgcgacgcacccagaagagttccgcgtcgcactcgttgac
ggtcaaaaactttacgatctcgacattgaacatcgcacccgcgaacaaaaaaaggccaat
atctacaaaggccgcattacccgcctcgaacccagcctagaagccgccttcgttgatttt
ggcgccgaccgccacggttttttaccgctcaaagaaatctctcgcgactattttgtgcgc
aaccccaaagacatccaaggtcgctacacggtcaaagatgtactcaaagaaggccaagaa
gtagtcgtccaagtgggcaaagaggaacgcggcaccaagggcgcggcgctttctaccttt
atcagccttgcgggccgctatttggtgcttatgcccaacaatccccgcgcgggtggcatt
tcgcgcaggattgacggcgacgaacgcagcgacctaaaagaaatcatgaatgcgctgacc
atccctgaagacatgggaatgatcatccgtactgcaggcatgggccgctctgccgaggag
ctgcaatgggatctggactatttgctacagctttgggcgtcgatcaccactgcatccaca
cagcgtcaagcaccgtttctgatttaccaagaaagcaacgtcattattcgcaccattcgc
gactatttgcgccaagacatcggcgaagtcatcatcgacactcccgaggtgcataaagat
gccttgggctttgttcgccaagtcatgccgcagtacgaaagcaagatcaagttgtacaaa
gataccgtcccgctgttcaaccgttatcaaattgaaagtcagatcgaggcggccttccag
cgggaagtcaagcttccgtctggcggctccatcgtcatcgacccgaccgaagcccttgtc
tccatcgacatcaactcctcacgcgccacgaaaggtgccgatattgaggaaaccgccctc
aacactaacctagaagcggcagaagaaatcgcacgccaattgaggctgcgtgatattggc
gggctgatcgtgattgattttatcgatatgaatcagcaaaaaaaccagcgcgaagttgaa
caccgcttaaaagaagccttagacattgaccgcgcccgcatccaaaccggccgcatctca
cgctttggcctgatggagctttcgcgccagcgcctgcgcccatcacttggcgaaaccagc
ggccacgtttgcccacgctgtaatggaacgggatacgttcgcgacctgcattcccttgcg
ctttcgatcatgcgcctgatcgaagaagaggcgatgaaggaaaacacggccgaaattcac
gcacaggtgccggtcaatgttgcgacctacctgctcaatgaaaaacgtgacaatatcgct
cgccaagagaagcaaaataacgcacgcattttggtaatccccaaccctaatctggaatcg
ccccactttgaagtcacccgtttccgcgccgatcagatcacgcagactacacccaccgct
agctatgagctgatcagcgagatcgaagaggaagaagaagaaatcgtatccttcggcatt
gaaaatacgatcaagcggcaggaagccgcagtgcaaatgatcaaaccaaccacccctgct
ccacagcctacagcggccgttaccaacaacgacgaagtggttgtgccgaatccaccgaaa
gaagccggcttttttgcgcgtctattcgcatggtttcttcacctgtttggcgccggaaaa
cctgctgaacccgaagtgccggaaacgccacctgcaaaggaagaagcgcaaccgcagcaa
cgctcctccggaaaccgcaaccgtcgcgacaatcgcaacaggcgcgataaccgcgataac
cgcgataaccgcgataaccgcgataaccgcgataaccgcgataaccgcgaccgtaacgcg
ggcgatcagcgccagcaagcaaaatcacaaaatcgagacgaacgcgttgaagcgaacggc
aatgtagcgcctaacgcaccagacgcaagcgacgacagcggcgagcagcagtccaaccgc
caggacagccgtggtgatcgccaaggcaatcagggccgcaacaaccgacgccaagatcgt
ggcgggcggaatcgcgaccgcgcccgcaacgaaaggcaagatgcggaaaccgccaccgat
tcaggcgagcgttccgaagcgaactctgattctcaagcagcacgtcagaatcagccacgc
agagatcgtaacgagcgcccagaccggcaaggccattcgcaagagcgcaatcaagagcgc
ggtcaggagcgtaatcaagagcgcaatcaagaacgaaaccaaggccgcagtcaggagcgt
aaccaagaagccggccaaagcagcgatcgccaaggcgaaagcgctgagaatgcgaatgtt
cgccacggcaaacgccgcaacccaagcgacacgcgcaagcgccgtcaaaacacgctacaa
gctgcagaacgtgccgctctgcccgcagaggaaacggggctcgaagttggcgttactcaa
gcagaaaatgctggccaaaacgctgccatcgaagaagttaccgcagccactgccgtggca
atggcagtggcaaccacctccgtggccgtagccgaacccacagcgacgcacgaagcgcca
cctgcggccatcgctccaattgcggtagcaatgaccccagagccgttcgtcgcgagcgca
cctccacgagccgcagtaagtacgattgcaccggaaacaacagaggctccgcgcatccaa
ggcgaaacggtggcggttgcagcaacaagctcaagcgaagccgatcagccacgtgaaacc
gatcagccacgtgaaaccgacaggaagcccgacagttccacgcaagtagcggcacttgac
ccaacaccaatcgctatagaagccccatccgccgcttcaaccgaagaagcaccctcacgc
gcatctaacgatccgcgcgaggccagacgtcgccgcaaggcggaagaagaagcagccaaa
gcagctgccgaagcttccgagtctaacgacgcggctgcggttccgtaa
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