Gamma proteobacterium HdN1: HDN1F_37780
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Entry
HDN1F_37780 CDS
T01300
Symbol
uvrD
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03420
Nucleotide excision repair
gpb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDN1F_37780 (uvrD)
03430 Mismatch repair
HDN1F_37780 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_37780 (uvrD)
Enzymes [BR:
gpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDN1F_37780 (uvrD)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDN1F_37780 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HDN1F_37780 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
CBL47361
LinkDB
All DBs
Position
complement(4551781..4553997)
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AA seq
738 aa
AA seq
DB search
MNRSALTPASLLDSLNPAQRQAVSSDANRLLVLAGAGSGKTRVLVHRIAWLVIARGLSPR
GILAVTFTNKAAAEMRHRLQTLLQIPQGAMWVGTFHGIAHRLLRLHWQEAKLPEQFQVMD
SDDQQRVLKRVMREMQLEEARWPVRQAQSYINSHKDEGKRPAHIQHFGDVYNRTMVEVYE
RYQAACEVGGLVDFAELLLRSHELWLHHPELLRHYQQRFRHVLVDEFQDTNGVQYAWLRV
LVGQEQGITIVGDDDQSIYGWRGAKVENIQRFSEDFGGAETVRLEQNYRSTANILNAANA
VIGCNRERLGKQLWTEGKPGEPISVYPAFNDLDEARFVVERIQQHLHESFSYRDIAILYR
SNAQSRLLEEALMKAGVPYRIYGGQRFFDRLEIRNALAYMRLINYRHDDAAFERVLNVPP
RGIGERTVEQIREEARRLGQSMWIASLSLLEYRGLSARAGNALRAFLGLIEHMHQETLEL
SLADLIDHVVNASGLYEYHEKEKGDRGEVRTENLRELINAAREFEVEDEIAQSPLQEFIS
RAALEAGDGSTDTEEAVQLMTLHAAKGLEFPLVFMVGVEEGLFPSTQSNEDPSRLEEERR
LCYVGITRAMKKLYMTYAECRRLYGSDQIHAPSRFLREIPAEVMQEVRSYTSITRPTSGN
TRFGGGANSTASGTSAPKIVDSSAPFQLGQRVAHAKFGEGVVIQTAGNGASARVEVNFRT
AGRKELMLQYANLQALPN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgttccgcgttaacccctgcttctttgctcgattccttgaaccccgcccaacgg
caagccgtatcaagtgatgccaaccgtttgttagtgctcgctggcgcaggaagcggcaaa
acacgggtgttggtacaccggattgcatggctggttatcgcccgagggctgtcgccacgc
ggaatccttgcggttacgtttaccaacaaggcggctgcagaaatgcgccaccgtttgcaa
acgctgttgcaaatccctcaaggggcgatgtgggtgggcacattccatgggattgcgcac
cgtttgctgcggcttcactggcaggaagcgaagctgccagagcagtttcaggtgatggat
agtgatgatcagcagcgcgtattgaagcgcgtgatgcgtgagatgcagctggaagaggcg
cgttggccggtgcgtcaggcgcagtcttatatcaattcccataaagatgaaggcaagcgt
cccgctcatatccaacactttggggatgtttataaccgcacaatggtggaggtttacgag
cgctatcaggcggcttgtgaggtgggcggcttggtggattttgccgaacttctgctgcgt
tcgcatgagctgtggctgcatcaccctgagttattgcggcactaccagcagcgttttcgg
catgtattggtggacgagttccaggataccaatggcgttcagtatgcgtggcttcgtgtg
ttggtggggcaggagcagggaatcaccattgtgggggatgatgaccagtcgatttacggc
tggaggggcgcaaaggttgagaatattcagcgtttttccgaagattttggtggcgcagag
acggttcgcttagagcagaactaccgttcgacggccaatattctcaatgcagccaatgcc
gtgattgggtgcaaccgtgagcgtttgggcaagcagctttggactgagggaaagcctggg
gagccgatttcagtttatccggcttttaacgatctggatgaggcgcggtttgtggtggag
cgcattcaacaacatttgcatgagagcttcagctatcgagatattgcgattctgtatcgc
tctaacgctcaatcgcgcttgttggaagaggcgctgatgaaggcgggtgtcccttataga
atttatggtggccagcgcttttttgatcgcctcgaaattcgtaacgcgcttgcttatatg
cgcttaatcaactatcgccacgacgatgcggcatttgagcgggtgctgaatgtgccgcca
cgcggcattggtgagcgcacggtggagcagattcgcgaagaagcgcgccgcctcggccaa
tccatgtggattgcatctttgtctctgctggaataccgtggcttaagtgcgcgcgcgggg
aacgcattgcgcgcatttcttggtctgatcgaacacatgcatcaagaaaccctcgaatta
tcgctcgcggatttgatcgaccatgtggtaaatgccagcggcttgtatgagtatcacgag
aaggaaaaaggcgatcgtggcgaagttcgcactgaaaacttgcgtgaactaattaacgcg
gcccgtgagtttgaggtagaagatgagatcgcccaaagcccgctgcaggaatttatttcg
cgcgccgcgctagaagctggggatggcagtacggatacagaagaggcggtacagctgatg
acgctgcatgcggccaaaggtctggaattccccttggtatttatggtgggcgtggaggaa
ggtttattcccttcaacgcaatccaatgaagatccatcgcggttggaggaagagcgcagg
ctttgctatgtgggcattacccgcgcgatgaaaaaactttatatgacatacgcggaatgc
cggcggttatatggaagtgatcagattcatgcgccgtcgcgctttctgcgtgaaattccc
gccgaggtgatgcaggaggttcgctcttacaccagcattactcgcccgacctctggaaat
acgcggtttgggggtggcgctaattctacagcgagtggaacaagcgcaccgaagatcgtg
gatagcagtgcgccttttcagttggggcagcgggtagcccatgcgaaatttggcgaagga
gtggtgatccaaacggccggcaacggcgcgagtgcacgtgttgaagtaaattttcgtaca
gcgggccgcaaggagctgatgctacagtatgcgaatttgcaggcgcttcctaattag
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